Bacterioplanes sanyensis: CHH28_13940
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Entry
CHH28_13940 CDS
T04982
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bsan
Bacterioplanes sanyensis
Brite
KEGG Orthology (KO) [BR:
bsan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsan03019
]
CHH28_13940 (hrpA)
Enzymes [BR:
bsan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHH28_13940 (hrpA)
Messenger RNA biogenesis [BR:
bsan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CHH28_13940 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
ResIII
T2SSE
AAA_25
PSI_PsaE
SLFN-g3_helicase
AAA_23
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
ASP39707
UniProt:
A0A222FKZ5
LinkDB
All DBs
Position
3016416..3020321
Genome browser
AA seq
1301 aa
AA seq
DB search
MQASTQPDIKALHKAIDQCLLKDQFPARRSVRQIQQRIDQQQSIDQPLQRLLKRIETSQA
ARARRSQPITLSYPQNLPVSERREDILALIREHQVVVIAGETGSGKTTQLPKLCLEAGLG
QAGRIAHTQPRRLAARSVAARIAEEINTPLGDLVGYQIRFTDNSSDDTRIKLMTDGILLA
QTQHDRFLNEYDAIIIDEAHERSLNIDFLIGYLKQLLPKRPDLKVIITSATIDVERFSKH
FDNAPVVEVSGRSYPVEMRYRPLVREDQEAEDQSLFEGIDAALAELRGEDKKNGQPGDVL
VFLPGEREIRECAEYLRRQSLPATDILPLYARLSAADQQRIFRPHGGRRVVLSTNVAETS
LTVPGIRYVIDSGVARISRYSYRSKVQRLQIEAISQASANQRAGRCGRTAPGVCIRLYEQ
ADFEARPEFTDPEIRRTNLAAVVLQMLHLKLGKLQSFPFVDAPDERFVRDGFNLLSELEA
VDEQHQLTDIGRQMARLPLDPRVSRMLLEAQRQQSLSEVLIIAAALSVQDPRERPPEKKQ
AADEKHRLWRHDDSDFLTLVNLWQGYEEQRQALSQNQLRKWCQKHYLSFMRLREWRDTHR
QLHILCKELSLNENGEPADYASVHKALLAGMLSQIGFKAEGSEYLGARNRKLMIFPASGL
YKKRPKWIMAAELMETSRLYAREVALVEPQWIEEIGRPLLKYQYFEPYWHQKRGQVVAFE
QSSLYGLVVNPKKRVDYSKTHAPEARTLFIQQALVEQQLGSRVDFYQHNIELIREVTEYE
EKSRRRDLVIDDAVLAAFYDQHLPTHIASRRQLESWCKKHPQQQQALKLTRDFLLSPDAA
GIGVADFPTELEWNGLMFPLKYSFAPGAVDDGISLQVPLAMLQQVPAARIDWLVPGFIHD
KVAQLIKGLPKAKRKQFVPVPQTADVFLRQQVFAQGDLLSCLLDYLNRNASMRVERQELS
AAELPPHLQMNIQVMEDGELFEQGRDLAALQQAFSDVSQSQVQNLAHADFQRAGIERWDF
GDLPAMVETDLNGLPVRAFPCLKCGDKELSLTVEADQALAEQQHRAGVVLLYRRMFAAQA
KVIRADLQKAVGSRWLQAKGMGTQQTLAESLLAAVFRQVFVPHDQPAPYAEADFVERQQR
RDQLLVQGALMIEQFDQWMTLRHGILKSMSGAVSLDRAMAYSDVKARLEQLLAPGFMEQT
PWQYLQCFTRYLKAMAYRLDKLQGNLPRDRQAMLEFDTLEQPYLELVAGQDIPPLSELAE
FGWLLQEWRVSLFAQPLGTREPVSLKRLKAKWEGLDKSLHA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggcatccactcaacccgatatcaaagcactgcacaaagccattgatcagtgttta
ttaaaagaccaatttcctgcccgccgcagcgttcgccaaattcaacaacgcattgatcag
caacaatccatcgatcagccgctgcagcgcctgttgaaacgcattgaaaccagtcaggcg
gccagagcgcgtcgcagccagccaatcacactgagttacccacaaaacttgcccgtcagc
gagcgccgcgaggacattctggcgttgattcgcgagcaccaagtggtggtgattgcgggc
gaaaccggcagtggtaaaaccacgcaattgccgaagctctgtttagaggccggattgggc
caggccgggcgcattgctcatactcaacccaggcggttggccgcccgttccgtcgctgcc
cgtattgccgaagagatcaatacgccattgggcgatctggtgggttatcagattcgtttt
accgacaatagcagcgacgatacgcgcatcaagttgatgacggacggtattttgttggcg
caaacgcaacatgaccgttttttaaacgaatacgacgccattattatcgacgaagcacac
gaacgcagtctgaatattgactttctgattggctatttgaagcaattattgcccaagcgc
cccgatcttaaagtgatcattacctcggccaccatcgatgtagagcgtttctccaagcac
ttcgacaatgccccggtggtggaagtctcgggtcgttcttatccggtagaaatgcgttat
cgaccgctggtgcgcgaagatcaggaagccgaagaccaaagcctgtttgagggtattgat
gcggcgttggcggagctgcgcggcgaggataagaaaaacggtcaaccgggcgatgtgctg
gtatttttgcccggtgagcgagaaattcgtgaatgcgctgagtatttacgccgccaatcc
ttgccagccaccgacattctgccgctgtatgcgcgactcagtgccgcagatcagcaacga
atatttcgtcctcatggcggccgacgtgtggtgctgtccaccaatgttgccgaaacgtct
ttgacggtgcctggtattcgctatgtgatcgattccggcgttgcccgcatcagtcgctac
agttatcgcagtaaagtgcaacgactgcagattgaagccatttctcaagccagcgctaat
cagcgcgccgggcgctgtggtcgtaccgcgccgggtgtgtgtattcgcctgtatgagcaa
gccgacttcgaggctcgccctgagtttaccgacccagagattcggcgcacgaacttagcc
gctgtggtgctgcagatgctgcatctgaaactgggtaagctgcagtcgttcccgtttgtg
gatgcacccgacgagcgttttgtgcgcgatggctttaatttgttgtcggagcttgaggcc
gttgatgagcagcaccagctaacggacatcggccgtcaaatggcgcgcttgccattagac
cctcgtgtatcgcgcatgctgcttgaagcacagcgtcagcaatctttgtcggaggtgttg
atcatcgccgctgcgctgtcggtgcaggatccgcgcgagcgtccgccggaaaagaaacaa
gcggcggatgaaaaacatcgcttgtggcgtcacgacgactcagactttttgacgttggtg
aatttatggcaaggctatgaagagcagcgtcaggctttgagtcagaatcagctgcgcaaa
tggtgtcaaaaacactatttgtcctttatgcgtttacgtgagtggcgtgatacgcaccgt
caactgcacattttgtgcaaagagctgtcgctcaacgaaaatggcgaaccggccgattat
gcgtctgtgcacaaagccttgttggccggcatgctcagtcaaattggttttaaagccgag
ggcagtgaatacctcggggcgcgcaatcgcaaactgatgatatttccggcgtccggcctg
tataaaaaacgccctaaatggattatggcggcggagctgatggaaacgtcgcgcttatat
gcgcgagaagtggcgttggtggagccgcaatggatcgaagagattggccgtccgctattg
aaataccagtattttgagccctattggcaccaaaagcgcggacaagtcgtcgcctttgag
caaagcagtttgtacggcttggtggtcaacccgaaaaaacgggtggattacagtaaaacc
cacgcaccagaggcgcgtacgctgtttattcagcaagcactggtggagcagcagctcggc
agtcgggtcgatttttatcagcacaatattgagctgattcgtgaagtgaccgaatacgag
gaaaaatcacgccgccgtgatttggtgatcgatgatgcggtgctggccgctttttacgac
cagcacttgccgacgcacatagcctcgcgtcgccagctggaaagttggtgtaaaaaacac
ccacaacaacagcaagccctgaagctgacgcgtgattttctgctcagtccagacgcagcc
gggattggcgttgccgatttccccaccgaactggagtggaatgggctgatgtttccattg
aaatacagctttgcccctggggcggtggacgatggtatttcattgcaagtgccgttggcg
atgttgcagcaagtgcctgcagcgcgcatcgactggctggtgccgggctttattcacgat
aaggttgcgcagctgatcaagggcttgcccaaggccaaacgcaaacagtttgtgccggtg
ccgcaaaccgccgatgtgtttttgcgccaacaggtgtttgcccaaggcgatttgctctct
tgcttattggattatctaaatcgcaatgccagcatgcgcgttgagcgccaggagctgagc
gcggcagagttgccgccacacttgcagatgaatatccaggtgatggaagacggtgagctg
ttcgagcaggggcgtgacttggccgctttgcagcaagcgtttagcgacgtcagtcaatcg
caagtgcagaatctggctcacgctgattttcagcgtgctggtatcgaacgttgggacttt
ggcgatttacccgccatggtcgagaccgatttgaacggcctgccggtgcgcgcatttcct
tgtttgaaatgtggcgacaaagaactctcgctaacggttgaggcggatcaggcgttggca
gagcaacagcatcgcgccggtgttgtgctgttgtatcggcgtatgttcgccgcacaagcg
aaagtcattcgcgctgatttgcaaaaagcagtggggtcacgttggttgcaagccaaaggt
atgggcacgcagcaaacgctggccgagtcgctgctggcggcggtgtttcgccaagtgttc
gtcccgcatgatcagccggcgccctatgctgaagccgattttgtagaacgccagcaacgc
cgtgatcagctgctggtgcaaggagcgctgatgatcgagcaattcgatcagtggatgacc
ttgcgtcatggcattttaaagtcgatgagcggcgcggtcagtttggatcgggcaatggct
tacagcgatgttaaagctcgactggagcaattgctggcgcctggctttatggagcaaacc
ccctggcaatacctgcagtgctttacgcgttacctaaaagccatggcataccgcttagac
aagctgcagggcaatctgccgcgtgatcgccaagccatgttggagttcgacactttggag
cagccgtatctggagctggtggctggtcaggacataccgccattgagtgaactggcggag
tttggctggctgctgcaggagtggcgggtgtcattgtttgctcagcctctgggcacacga
gagccggtctctctcaagcgcttgaaagccaaatgggaagggctggataagtcattgcac
gcctga
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integrated database retrieval system
