Brachybacterium saurashtrense: DWV08_04090
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Entry
DWV08_04090 CDS
T05573
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsau
Brachybacterium saurashtrense
Pathway
bsau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DWV08_04090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsau03400
]
DWV08_04090 (mfd)
Enzymes [BR:
bsau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DWV08_04090 (mfd)
DNA repair and recombination proteins [BR:
bsau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DWV08_04090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
AAA_19
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXK44883
UniProt:
A0A345YLT1
LinkDB
All DBs
Position
891421..895032
Genome browser
AA seq
1203 aa
AA seq
DB search
MTAQSAAPRPTTATAPLAPLLDQLAAGRDLTAARALVDEGAQSGEGGSIVAATGLFPFLV
ADLARRATPEQPLVVVTATTRAAEDLRAALSALVGTAHVAELPAWETLPHERLSPRADTV
AKRLSTLRRIAHPETEDPVHVVLMPVRSLLQPIATGLGDLRPVRAAVGETYPLEDLERDL
VDAAYVRVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEVDDVRYFSVADQRSLDP
APRGLDAPPCREILLTPEVRERARARAEELPGVRDLLLRIADGIAADGMESLSPVLVDGM
EQVADVLPAGARFLVLDPEKARARADELVATTDEFLAAAWSSAAAGGGLPIDVGAASFVP
LSEAKGHAREGGRAWFTLAAFGLDTDVDLTTSSTTHPGYSGKPGDAARDLERRRTEGWSV
LATMVGPGGARHVAETLREEGLPAVYGPDLAEPIGPGEAVVTVGPFAEGLIVEDLRLVLA
AERDLTGKSGARRGEERKMPSRRRNVVDPLQLRPGDHVVHSHHGVGRFVEMTSRAVGTGA
KRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSRA
RKAIREIADELVRLYSARQSAPGRAFGPDTPWQRELEDAFEFVETPDQLSTIDDVKADME
KSVPMDRLILGDVGYGKTEIAVRAAFKAVQDGTQVAVLAPTTLLAQQHLDTFSERFTGFP
VTVKGLSRFQSPAESTATIKGLADGSVDVVIGTHRLLTGNVRFKELGLLIVDEEQRFGVE
HKETLKALRTNVDVLSMSATPIPRTLEMAVTGIREMSILATPPEERHPVLTYVGAQEDKQ
VTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVAVAHGKMNEHQLERVIVDF
WERDFDVLVCTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGRSSERAYAYFLYN
ASKPLTELAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVAAFRGESTAPEKEIRVELPLDAHVPHDYIGSERLRLEAYSKLSAVREASEIAQI
RAELADRYGAPPAPVEVLLDVARFRLDARAAGVDEVQAQGKMIRFAHVEVPDSAAMRMKR
LYPGTVLKPATRQVLVPRPMTSRFGGTELRDHDLLEWAREVLRVLVPAAAEQISAPTVEG
SAQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcacagagcgcagcccctcgccccaccaccgccacggcgccgctggcgccgctg
ctggaccagctcgccgccgggcgcgacctcaccgcggcccgtgccctggtcgacgagggg
gcgcagagcggggagggcggcagcatcgtcgcggcgacggggctgttccccttcctcgtc
gcggacctcgcccgtcgcgccacccccgagcagcccctcgtggtggtcaccgccaccacc
cgcgccgcggaggatctccgtgcggcgctgtccgcgctcgtgggcaccgcgcacgtggcc
gagctgcccgcctgggagacgctcccgcacgagcggctctcgccccgcgcggacaccgtc
gccaagcgcctgtccaccctgcgccgcatcgcgcatccggagaccgaggatccggtgcac
gtggtgctgatgcccgtgcggtccctgctgcagccgatcgcgacaggcctgggcgacctg
cgccccgtgcgcgccgcggtgggggagacctacccgctcgaggatctcgagcgcgacctc
gtcgatgcggcctacgtgcgcgtggacatggtggagaagcgcggcgagttcgcggtgcgc
ggcggcatcctcgacgtcttcccgcccacggagccgcaccccgtgcgcgtggacctgttc
ggcgacgaggtggacgacgtccgctacttctccgtcgccgatcagcgctccctcgacccc
gccccgcggggcctggacgccccgccgtgccgcgagatcctgctcacgcccgaggtgcgc
gagcgggcccgcgcccgcgccgaggagctgcccggcgtgcgcgacctgctgctgcggatc
gccgatgggatcgccgccgacggcatggagtccctcagcccggtgctggtggacggtatg
gagcaggtggccgacgtgctgcccgccggcgcccgcttcctggtgctggaccccgagaag
gcccgcgcccgggccgacgagctggtcgccaccacggacgagttcctcgccgccgcgtgg
tccagcgccgccgccggcggcggtctcccgatcgacgtcggcgccgccagcttcgtgccg
ctgtccgaggccaaggggcacgcccgcgagggcggccgcgcctggttcaccctggccgcc
ttcggcctggacaccgacgtggacctcaccacctcctccaccacccaccccggctactcc
ggcaagcccggggacgccgccagggacctcgagcgccgccgcaccgagggatggtccgtg
ctcgccaccatggtgggccccggcggcgcccgccacgtcgccgagaccctccgcgaggag
ggcctgcccgccgtgtacggccccgacctcgcggagccgatcggccccggcgaggccgtg
gtcaccgtcggccccttcgccgagggcctgatcgtcgaggacctgaggctggtcctcgcc
gcggagcgcgacctcaccggcaagtccggggcccgtcgcggcgaggagcggaagatgccc
tcccgccgccgcaacgtggtggacccgctgcagctgcgcccgggcgaccacgtcgtccac
tcccaccacggcgtgggccgcttcgtggagatgaccagccgcgccgtgggcaccggcgcc
aagcgcaccacccgcgagtacctcgtcatcgagtacgccccctcgaagaagggacagccg
ggggaccgcctctacgtgcccagcgatcagctggaccaggtcaccaagtacgtcggcggc
gaggagcccagcgtcaaccgcatgggcggcgccgactgggcgaagaccaagtcccgggcc
cgcaaggcgatccgggagatcgccgacgagctggtgcgcctgtactcggcgcggcagtcc
gcgccggggcgcgccttcggcccggacaccccttggcagcgggagctcgaggacgccttc
gagttcgtcgagaccccggaccagctctccaccatcgacgatgtcaaggcggacatggag
aagtccgtcccgatggaccgtctgatcctcggcgacgtgggctacggcaagaccgagatc
gcggtgcgcgccgcgttcaaggccgtgcaggacggcacccaggtggccgtgctcgccccc
accacgctgctcgcccagcagcacctcgacaccttctccgagcgcttcaccggcttcccg
gtcacggtgaaggggctgtcccgcttccagagcccggcggagtccaccgccacgatcaag
ggcctcgcggacggctccgtggacgtggtgatcggcacccaccgcctgctcaccggcaac
gtgcgcttcaaggagctcgggctgctgatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagaccctcaaggccctgcgcacgaacgtggacgtgctgtcgatgtccgccacc
ccgatcccgcgcaccctcgagatggcggtgaccggcatccgggagatgtcgatcctcgcc
accccgccggaggagcgccacccggtgctcacctacgtcggggcccaggaggacaagcag
gtcaccgccgcgatccggcgcgagctgctgcgcgaggggcaggtgttctacatccacaac
cgggtggaggacatcgaccgggtcgccgcgcacctgcgcgagctggtgcccgatgcgcgc
gtggccgtcgcccacggcaagatgaacgagcaccagctcgagcgggtgatcgtggacttc
tgggagcgggacttcgacgtgctggtgtgcaccaccatcgtcgagaccggcctggacatc
gccaacgccaacaccctgatcgtcgagaacgcggacaggttcggcctctcccagctgcac
cagctgcgcggccgcgtgggccgctccagcgagcgcgcctacgcctacttcctctacaac
gcgtccaagccgctcaccgagctcgcgcacgaccggctcaccaccctcgccaccaacacg
gacctcggcgccggcatgcaagtggccatgaaggacctcgagatccgcggcgccggcaac
ctgctgggcggggagcagtccgggcacatcgccggggtgggcttcgacctctacgtgcgg
atggtgggggaggccgtggcggccttccgcggcgagtccaccgcgccggagaaggagatc
cgggtggagctgccgctggacgcccacgtcccgcacgactacatcggctccgaacggctg
cgcctggaggcgtactcgaagctctccgcggtgcgcgaggcctccgagatcgcgcagatc
cgggccgagctcgcggaccgctacggcgccccgccggcgccggtggaggtgctgctggac
gtggcccgcttccgcttggacgcccgcgcggccggggtcgacgaggtgcaggcccagggc
aagatgatccgcttcgcgcacgtggaggtgccggactccgccgcgatgcggatgaagcga
ctgtacccgggcacggtgctcaagcccgccacccgccaggtgctggtgccccggccgatg
acctcccgcttcggcggcaccgagctgcgcgaccacgacctgctggagtgggcgcgcgag
gtgctgcgcgtgctggtccccgccgcggcggagcagatctccgcgcccacggtggagggc
tcggcgcagtag
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