Burkholderia savannae: WS86_06125
Help
Entry
WS86_06125 CDS
T07932
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bsav
Burkholderia savannae
Pathway
bsav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS86_06125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsav03019
]
WS86_06125
03009 Ribosome biogenesis [BR:
bsav03009
]
WS86_06125
Enzymes [BR:
bsav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WS86_06125
Messenger RNA biogenesis [BR:
bsav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WS86_06125
Ribosome biogenesis [BR:
bsav03009
]
Prokaryotic type
rRNA processing factors
WS86_06125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOJ80240
LinkDB
All DBs
Position
1:complement(1264609..1267803)
Genome browser
AA seq
1064 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQPAPEAAPAAVAPASGGFVKWLKNLFGMQPAAASAPAPAAQEAAARPARER
GERGEKAERGGDRNRNRRGGGAQQAGGRDQAAAGGGRAQAPRAEREGKETREPREGREAR
EGRGSRDNREGREGREPRESREQREQREPREPREPREPREPRERAETVDAAETQRSERRE
RGERGERRKPVPHVATLETVNRGESAHAEPAEKPAHALGAEAGVEADSNARDGEERRRRR
RGRRGGRREREDEAAGAVQAAEAGEDVTAEAAAADVHEAAAPVAGHEPQHAAQAGVAAVA
ASAVAAEAVAHVESGATAEPQAAAETPAAGAEQAPAAPARAVEAPMQAAAVEAAPAAAAH
AEPAPAETVQAQAAAPAEAAAVEAAPVAAAAADVSEAAAPAIAPAPVAEPAPAVAPQPAP
VAAAPVETRIAHEPPAVAEAPAAPAAEAIAPATAAAPVAAAPGTNLSTVLEAAGLVWVNT
DADKLHAAQAVAAQIVQPMRVPRERKPLPPVDTTPMQQVETTHR
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgaaaccgccggacgcgaacagcgcaaaggcaac
atctacaagggcgtcgtcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgttgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggaactgcgcgaaacgatggcgcaactgcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
caccccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgaccgagatccatgatcag
gcccgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgttcccctcttctcgcgctttcagatcgagcaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaggcggccgacgaagtcgcgcgccagctgcgcctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggcgaagagccagcgcgaagtcgag
cagcgcctgaaggatgcgttgaagcatgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcgggctgatggagctgtcgcgccagcgcctgcgtccggccctctccgaaggcagc
cacgtgacgtgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgttgcggatcattcaggaagaagccatgaaggagaacaccgcggcgatccac
tgccaggtgcccgtcgaggtgacggccttcctgctcaacgaaaagcgccaggaaatcaac
aagatcgagtcgcggttcaaggtcggcgtcgtgctgattccgaacaagcatctcgatacg
ccgcactacaagctcgagcgcctgcgccacgacgacgcgcgcctcgacgatccgcgcgcc
tcgtggaagatggccgaggaagccgcccgcgagctcgaggccgaaaccggctacagcaag
cgcgcggaggaaacgaagccgcgtcaggaagcggccgtgaagggcatcacgcccgagcgt
ccggcaccgagccccgcaccgcagcgccagcccgcacccgaggcggcgcccgccgccgtc
gcaccggcgagcggcggattcgtcaagtggctgaagaacctgttcggcatgcagccggcc
gcggcctccgcgccggcgcccgccgcgcaggaagcggccgcgcgtccggcgcgcgagcgt
ggcgagcgcggtgaaaaggccgaacgcggcggcgatcgcaatcgcaaccgtcgcggcggc
ggcgcgcaacaggcaggcggccgcgaccaggccgcagcgggcggcggccgcgctcaggcg
ccgcgcgccgagcgcgaaggcaaggaaacccgcgagccgcgcgaaggccgcgaggcacgc
gaaggccgcggcagccgggacaaccgcgaaggtcgcgaaggccgtgaaccgcgcgaaagc
cgtgagcagcgcgaacagcgcgagccgcgtgagccgcgtgagccgcgtgagccgcgtgag
ccgcgtgagcgcgccgaaacggtcgatgccgcggaaacacagcgcagcgagcgccgtgag
cgcggcgaacgcggcgagcggcgcaagcccgtgccgcacgtcgcgacgctcgaaacggtg
aaccgcggcgaaagcgcccacgcggaaccggccgagaagccggcgcatgcgctcggcgcc
gaagccggcgtcgaggccgattcgaacgcccgcgacggcgaggaacgccgccgtcgccgt
cgcggtcgccgtggtggccgccgcgagcgcgaggatgaagccgcaggcgccgtgcaagcg
gcggaagccggcgaagacgtgacggccgaagcggccgcagccgatgtgcacgaagccgcc
gcgccggttgccggccatgagccgcagcacgccgcgcaggcgggtgtagcggcggtagcg
gcgtcagccgtcgccgcggaagcggtcgctcacgtcgagagcggcgcgacggccgagccg
caagcggcagccgaaacgcccgccgccggggccgagcaggctccggcagcgcccgctcgc
gctgtcgaagcgccgatgcaagccgcagcggtggaggccgcaccggcagccgcggcgcac
gccgagccggctccggccgaaaccgtgcaggcgcaagccgccgcgccggccgaggccgct
gccgtcgaggccgcaccggttgcagccgccgcggcggacgtgtccgaagcggcggctccg
gcgattgctccggccccggttgccgagccagcgccggccgtcgcgccgcagcccgcgcct
gtcgcggccgcgcccgtcgaaacgcgcatcgcgcacgagccgcccgccgtcgccgaagca
ccggctgcgccggctgccgaggccatcgcaccggctacggccgccgcccccgtcgcggcc
gcgccgggcacgaacctctcaacggtgctcgaagccgccggcctcgtctgggtcaatacg
gacgcggacaagctgcatgccgctcaggccgtcgccgcgcaaatcgtgcagcccatgcgc
gtgccgcgcgaacgcaagccgctgccgcccgtcgacacgacgccgatgcagcaagtcgag
acgactcaccgctga
DBGET
integrated database retrieval system
