Burkholderia savannae: WS86_06940
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Entry
WS86_06940 CDS
T07932
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bsav
Burkholderia savannae
Brite
KEGG Orthology (KO) [BR:
bsav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsav03019
]
WS86_06940
Enzymes [BR:
bsav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WS86_06940
Messenger RNA biogenesis [BR:
bsav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WS86_06940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
T2SSE
AAA_19
NACHT
nSTAND3
AAA_23
nSTAND_NTPase5
PhoH
Motif
Other DBs
NCBI-ProteinID:
AOJ80380
LinkDB
All DBs
Position
1:1443288..1447469
Genome browser
AA seq
1393 aa
AA seq
DB search
MSNVPKSPAQKSAGTPGEPRPAGASAQRPPRSRQTAPEPDRAPSAERRDCGPRAARPPRA
RIAPNPVPPITFPESLPVSGKRDEIARAIAAHQVVIVCGETGSGKTTQLPKICLALGRGL
GAGGSGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTDGI
LLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKQILPKRPELKLIVTSATIDADRF
ARHFGSDERPAPVIEVSGRLYPVELRYRPIADDRPAAVRHAEGAGSGRDRAKTAREAERD
LMDGIVDAVDELCREGPGDVLVFLAGEREIRDAAEALRKHHPPHTEILPLFARLSAAEQE
RVFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESVSQAAA
NQRAGRCGRVADGICIRLYEESDFAGRARFTDPEILRSSLASVILRMKSLHLSAIESFPF
IEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALREV
LVIASALSVQDPRDRPLDAQEQADQAHRRFADERSEFVQWLRIWAWFEEAVAHKKSNRQL
VDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLNEAEATFEQIHLSLLTGLLGNIGFK
ADDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIERIGA
HLLKKSLSEPHWEKRPAQVSAYERATLYGLTVYHRRRVAFGRQDPARARELFIRGALVDG
EFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDALIHAFYDQAIAQGVHTGAAFERWY
RDEVRKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRATMAGVEMALSYHFEPGAPR
DGVTLAVPLFALNQVDARRAEWLVPGMLKEKVQLLLKSLPQKLRRHCVPLPEYAAGFVER
AGAERFGAAGVGVGGLVEALIADIRAETQVATKTSDFKLETLPAHLFMNFKVIDEHGRQL
AMGRNLAQLRAELGAQAQQHFQKIAAAATLAPAGDGAGTAAAAIAAGGARPAARAGAGAG
AGTGARAGASPQAAAPSAAQAGAADAGATALYENLTTWNFGKLPELLEIRRRGETLFGYP
ALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQYMSL
GTQDELRDQLIATALDRACLQEPLPADDASFHARRDEGRSRLNLLAQEIARLVGQILAEY
AGLAKKLAQAKPFPAAHADMQGQLAALAGKRFVVDTPYAQLAHFPRYLKGVALRIDKLKA
DPARDARQFAELQPLAQHYQRSVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVS
VKRLYKVWESMQR
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgctcaaaaaagcgcgggcacgccgggcgagccgcgc
cccgccggcgcgtcggcgcaacggccgccgcgctcccggcagacggcccccgagccggat
cgcgcgccgagcgccgagcgccgcgattgcggccctcgcgccgcccggccgccgcgcgcg
cgcatcgcgccgaatcctgttccgccgatcacgtttcccgagagcctgcccgtgtcgggc
aagcgcgacgagatcgcgcgcgcgatcgccgctcaccaggtcgtgatcgtctgcggcgag
acgggctcgggcaagacgacccagttgccgaagatctgcctcgcgctcggtcgcggcctc
ggcgcgggcggctcgggcctgatcggccacacgcagccgcgccggctcgcggcgtcgtcg
acgggccggcggatcgcggaggagctcggcacgccgttcggcgaggtggtcggctacaag
gtgcgcttcaccgacaatctcgcgccgggcgcgtccgtcaagctgatgacggacggcatc
ctgcttgccgagacgcagaccgatccgctgctgaaggcgtacgacacgctcatcatcgac
gaggcgcacgagcgcagcctgaacatcgatttcctgctcggctacctgaagcagatcctg
ccgaagcggccggaattgaagctgatcgtcacgtcggcgacgatcgacgcggaccgcttc
gcgcgccatttcggcagcgacgagcggcccgcgccggtgatcgaggtgagcgggcggctg
tatccggtcgaactgcgctaccggccgatcgccgacgaccggccggccgccgtgcgccac
gcggagggcgcgggctcgggccgcgaccgcgcgaagaccgcgcgcgaggcggagcgcgac
ctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgaaggcccgggcgacgtg
ctcgtgttcctcgccggcgagcgcgagatccgcgacgcggccgaggcgctgcgcaagcac
catccgccgcacaccgagatcctgccgctcttcgcgcggctgtcggcggccgagcaggag
cgcgtgttcaagccgtcgaacgcgcgccggatcgtgctcgcgacgaacgtcgccgagacg
tcgctcacggtgccgggcatccgctacgtcgtcgatacgggcctcgcgcgcgtgaagcgc
tattcgtaccggaacaaggtcgagcagttgcagatcgagtcggtttcgcaggcggccgcg
aaccagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgcctctacgaa
gagagcgatttcgccggccgcgcgcgcttcaccgatccggaaatcctgcgctcgtcgctc
gcctcggtgattctgcggatgaaatcgctgcatttgtcggcgatcgaatcgttcccgttc
atcgagccgccgcccggccgagcgatcgcggacggctatcagttgctcaacgagctcggc
gcggtcgacgacgacaacgcgctcacgccgctcggccgcgagctcgcgcgcctgccgctc
gatccgcgggtcgggcggatgatcctcgccgcgcgcgaccagcaggctctgcgggaagtg
ctcgtgatcgcgagcgcgctgtcggtgcaggacccgcgcgaccgcccgctcgacgcgcag
gagcaggccgaccaggcgcaccggcgcttcgccgacgagcgctccgaattcgtccagtgg
ctcaggatctgggcgtggttcgaggaggccgtcgcgcacaagaagtccaaccggcagctc
gtcgacgcgtgccggcagaatttcctgtcgcacctgcggctgcgcgagtggcgcgacgtc
cactcgcagctcttgaccgtcgtgcgcgagcacggctggcggctgaacgaggccgaagcg
acgttcgagcagatccacctgtcgctgctgacgggcctgctcggcaacatcggcttcaag
gccgacgacgagccgcactatctcggcgcgcgcgggatcaagttccatctgtggcccggt
tccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgaactcgtcgagacgagc
cgcctgtacgcgcgctgcatcgcgaagatcgagcccgaatggatcgagcggatcggcgcg
cacctgctgaagaaatcgctgtcggagccgcactgggagaagcgcccggcgcaggtcagc
gcgtacgagcgcgcgacgctgtacgggctcaccgtctatcaccggcggcgcgtcgcgttc
ggccggcaggacccggcgcgcgcgcgcgagctcttcattcgcggcgcgctcgtcgacggc
gaattcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgccgacatcgag
cagctcgagcacaagtcgcgccggcaggacgtgctcgtcgacgacgcactgatccacgcg
ttctacgatcaggcgattgcgcagggcgtccatacgggcgccgcgttcgagcgctggtat
cgcgacgaggtgaggaagagcgggcagccggaggacaagctgcgcctgctgtatctgtcg
cgcgacgacctgatgcgccacgaggccgccggcgtgacgaccgacctgttcccgaagcgc
gcgacgatggcgggcgtcgagatggcgctctcgtatcacttcgagcccggcgcgccgcgc
gacggcgtgacgctcgcggtgccgctgttcgcgctgaaccaggtcgacgcgcgccgcgcc
gagtggctcgtgccggggatgctgaaggagaaggtgcaactgctgctgaagtcgctgccg
cagaagctgcgccgccattgcgtgccgctgcccgagtacgcggcgggcttcgtcgagcgc
gccggcgccgagcgcttcggcgcggccggcgtaggcgtgggcggcctcgtcgaggcgctg
atcgccgacatccgcgcagagacgcaggtcgcgacgaagacgtccgacttcaagctcgag
acgctgcccgcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcagctc
gcgatgggccgcaatctcgcgcagttgcgcgcggagctgggcgcgcaggcgcagcagcac
ttccagaagatcgccgccgcggccacgctcgcgccggcgggcgacggcgcgggcacggcc
gccgccgcgattgcggcgggcggcgcgcggcccgccgcccgcgccggtgcaggtgctggt
gctggcaccggtgcgcgcgccggcgcgtcgccgcaggccgcggcgccgtcggcggcgcaa
gcgggcgcggccgacgccggcgcgacggcgctctacgagaacctcacgacgtggaacttc
ggcaagctgccggagctgctcgagatccgccggcgcggcgagacgctgttcggctatccg
gcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgattcgcccgaggaggcg
gcgcggattcaccgcgcgggcctcagacgcctgttcgcgctgcagctcaaggagccgatc
aagtatctggagaagaacctgccggggctgcgcgagatggcgatgcagtacatgtcgctc
ggcacgcaggacgagctgcgcgaccagctgatcgcgacggcgctcgatcgcgcgtgcctg
caggagccgctgcccgccgacgacgcgagcttccacgcgcgccgcgacgagggccggagc
cgcctgaacctgctcgcgcaggagatcgcgcggctcgtcgggcagatcctcgccgaatac
gcggggctcgcgaagaagctcgcgcaggcgaagccgttcccggccgcgcacgcggacatg
cagggccagctcgcggcgctcgccggcaagcgcttcgtcgtcgacacgccttacgcgcag
cttgcgcacttcccgcgctacctgaagggagtcgcgctgcggatcgacaagctgaaggcc
gatcccgcccgcgatgcgcgccagttcgccgagctgcagccgctcgcgcagcactatcag
cgctcggtcgcgcagcgcggcggcgtggcggacgcgcggctcgccgagttccggtggctc
ctcgaggagctgcggatctcgcttttcgcacaggagttgcgcacgccgatgccggtgtcg
gtcaagcggctctacaaagtgtgggagtcgatgcagcgctga
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