Burkholderia savannae: WS86_13175
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Entry
WS86_13175 CDS
T07932
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsav
Burkholderia savannae
Pathway
bsav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS86_13175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsav03019
]
WS86_13175
Enzymes [BR:
bsav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WS86_13175
Messenger RNA biogenesis [BR:
bsav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WS86_13175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AOJ81464
LinkDB
All DBs
Position
1:complement(2883665..2885113)
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AA seq
482 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQVVYDVA
EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRALPLEALELDLPRHRHDDRGGRRERDRDERRGGASVGRRSAG
GERSHHSRRDAPIDDFFLKPYVPSPAASQPEEAKPVHPEKKAPKQPLAALLGGFGMPRKT
SS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccaagcctgtcgacgcgacgttcgatcaattcggccttgccgcc
gagatcctgaaagcgattgccgatcagggctatacgacgccgacgcccattcaggcgaag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgccgcgcaaaccggcaccggc
aagaccgcgagcttctcgttgccgatcatccagcgcctgctgccgcaggcgaacacgagc
gcgtcgcccgcccgccatccggtgcgcgccctcattctcacgccgactcgcgagctcgcc
gaccaggtcgccgcgaacgtccacgcatacgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggcgtcgacatgaatccgcagatggccgagctgcgccgcggcgtcgaggtt
ctgatcgcgacgccgggccgcctgctcgaccacgtccagcagaagacggcgaatctcggc
caggtgcagatcctcgtgctcgacgaagcggaccggatgctcgacatgggtttcctgccc
gacctgcagcgaatcctgaacctgctgccgaaggagcgccagacgctgctgttctcggcg
acgttctcgccggaaatcaagaagctcgcgtcgacctacctgcgcaacccgcagacgatc
gaagtcgcgcgcagcaacgcgacggcgacgaacgtcacgcaggttgtctacgacgtcgcc
gaaggcgacaagcaggcggccgtcgtcaagctgatccgcgaccgctcgctcaagcaggtg
atcgtgttttgcaacagcaagatcggcgcgagccgcctcgcgcgccagatcgagcgcgac
gggatcgtcgcgtcggcgattcacggcgaccgttcgcagagcgagcggatgcaggcgctc
gacgcattcaagcgcggcgagatcgaggcgctcgtcgcgaccgacgtcgccgcgcgcggg
ctcgacatcgtcgagctgccggccgtgatcaacttcgatctgccgttcaacgcggaagac
tacgtgcaccggatcggccgcacggggcgcgcgggcgcgtcgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctcgccgacatcgagaagctgatcaagcgcgcgctg
ccgctcgaggcgctcgagctcgacctgccgcgccatcgccacgacgaccgcggcggccgc
cgcgagcgcgaccgtgacgagcgtcgaggaggcgcatcggtgggccgccgctcggcgggc
ggcgagcgctcgcatcattcgcgccgcgatgcgccgatcgacgatttcttcctgaagccg
tacgtgccgtcgcctgcggcgagccagccggaagaggcgaagcccgtgcacccggagaag
aaggcgccgaagcagccgctcgccgcgctgctcggcgggttcgggatgccgcgcaagacg
tcgtcgtga
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