Burkholderia savannae: WS86_24160
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Entry
WS86_24160 CDS
T07932
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bsav
Burkholderia savannae
Brite
KEGG Orthology (KO) [BR:
bsav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsav03016
]
WS86_24160
Enzymes [BR:
bsav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WS86_24160
Transfer RNA biogenesis [BR:
bsav03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WS86_24160
Prokaryotic type
tRNA splicing ligases
WS86_24160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOJ85038
LinkDB
All DBs
Position
2:1349872..1351305
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AA seq
477 aa
AA seq
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MDLTRLEQHGEFEWHIPPAGAMRVPGIIYADRKLAAGMDDKVYEQVCNVATLPGIVGASY
AMPDAHWGYGFPIGGVAAFDAHAGGVISAGGVGFDISCGVRTLHTGLAREDIEAVKKKLA
DALFAHVPAGVGSTGRLRLSAAKTDDMLTGGAAWAVEQGYGAPLDLERIEEGGMVRHAKP
SAVSALAKKRQRDEMGTLGSGNHYLEVQEIADIYDPACAQCYGLRPGQVVVTIHCGSRGL
GHQIGTEFLKEMVVAAKRHGITLPDRELACAPILSELGERYLGAMRAAINCALANRQILT
HLTREVFAKVLPAAQLTLLYDVSHNTCKIEDHVIDGRRLQLYVHRKGATRAFGPGHPALP
DALRDAGQPVLIGGSMGTASYVLAGADAAGGERAFGSACHGAGRAMSRFAAARRWHGRAL
VDELAARGILIRSPSERGVAEEAPGAYKDVGAVVDAAAEAGLARKVARLVPIVCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggacttgacccggctcgagcagcacggcgaattcgaatggcacattccgccggcgggt
gcgatgcgcgtgccgggcatcatctatgcggaccgcaagctcgccgccggcatggacgac
aaagtgtacgaacaggtctgcaacgtcgcgacgctgccgggcatcgtcggcgcgtcgtac
gcgatgccggacgcgcactggggatatggctttccgatcggcggcgtcgcggcgttcgac
gcgcacgcgggcggcgtgatctcggcgggcggggtcggcttcgacatctcgtgcggcgtg
cgcacgctgcacacggggctcgcgcgcgaagacatcgaagcggtgaagaaaaagctcgcc
gacgcgctgttcgcgcacgtcccggcgggcgtcggcagcaccgggaggcttcggctgtcg
gccgcgaaaaccgacgacatgctgacgggcggcgccgcatgggccgtcgagcaggggtac
ggcgcgccgctcgatctggagcgcatcgaagagggcgggatggtgcggcacgcgaagccg
tccgcggtgtcggcgctcgcgaaaaagcgccagcgcgacgagatgggcacgctcggctcc
ggcaaccactacctcgaagtgcaggagatcgcggacatctacgatccggcgtgcgcgcaa
tgctacgggctgcggcccgggcaggtcgtcgtgacgatccactgcggatcgcgcgggctc
ggccatcagatcggcaccgaattcctcaaggagatggtggtcgccgcgaagcgccacggg
atcacgctgcccgatcgcgagctcgcgtgcgcgccgatcctgtcggagctcggcgagcgc
tatctgggcgcgatgcgcgcggcgatcaactgcgcgctcgcgaaccggcagatcctcacg
catctgacccgcgaagtcttcgcgaaggtgctgcccgccgcgcaactgaccctgctttac
gacgtgtcgcacaacacgtgcaagatcgaggatcacgtgatcgacggccgccgcctgcaa
ctttacgtgcaccgcaagggcgcgacgcgcgcgttcgggcccggccatccggcgctgccc
gacgcgctgcgcgacgcgggccagccggtgctgatcgggggtagcatgggaacggcgtcg
tacgttctcgcgggcgcggacgcggcgggcggcgagcgcgcgttcggttccgcgtgccac
ggcgcgggacgcgcgatgagccgcttcgcggccgcgcggcgctggcatggccgggcgctc
gtcgacgagctcgcggcccgcggcatcctgatccgcagcccgtcggagcgcggcgtcgcc
gaggaggcgccgggcgcttacaaggacgtcggcgcggtcgtcgacgcggccgccgaggcc
gggctcgcgcgcaaggtcgcgcggctcgtgccgatcgtctgcatcaagggttga
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