Brevundimonas subvibrioides: Bresu_1605
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Entry
Bresu_1605 CDS
T01291
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bsb
Brevundimonas subvibrioides
Pathway
bsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bresu_1605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsb03019
]
Bresu_1605
03016 Transfer RNA biogenesis [BR:
bsb03016
]
Bresu_1605
Enzymes [BR:
bsb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bresu_1605
Messenger RNA biogenesis [BR:
bsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bresu_1605
Transfer RNA biogenesis [BR:
bsb03016
]
Prokaryotic type
tRNA degradation factors
Bresu_1605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
FeoC
Motif
Other DBs
NCBI-ProteinID:
ADL00916
UniProt:
D9QGV0
LinkDB
All DBs
Position
complement(1576525..1578855)
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AA seq
776 aa
AA seq
DB search
MTKHPRKPAAGLPDEATLLAFLRDAGSAEKGDIARHFGLKGEDRRALREMIRGLEAAGKL
GKRGRKGFSEAGALPPVGVADVVEKDNDGELYVRMVEASADAPNALLIPDKGTPGPAPGL
GDRVLAKFELGPNGWEARLIKKLDTNNNRVLGVIRKSNKETRVEPVDRRSKDVLIVPAVQ
ATDLRDGDLVLAAIEKSDQRYGHKRGKILETVGREDDPRAASLIAIHTHGVPMGFSEAVE
QEAENQDLPTLKGRDDLRDIPFVTIDPADARDHDDAVYAQRDEDPKNEDGWIVWVAIADV
AAYVRPNTSLDREARAKGNSTYFPDRVEPMLPERLSNGLCSLKEGENRATLAVRMVFDSD
GRKLGHKFHRGLMRSHAKLSYEQAQAAIDGVETGGGTDDTTGPILDAILRPLWNAYHTML
KGRLKRAPLQIDSAERRIRMSPDGGIASIEKRVSLEAHRLIEEMMVQANVCAAETLEAKR
TPLIFRVHDTPSQEKVFNLADFLSTLGKPWNKGEAPTTKRFNKLLDETRDGPHAEVVNEV
VLRSQMQAIYSPENVGHFGLNLDRYAHFTSPIRRYSDLIVHRGLIRALNLGSDGLTDREI
AELPAIADQVTQTERRSMAAERDAMDRYIAAFLEDRVGATFTGRITGVTRFGLFVRLDET
GADGLVPVSSLGSEYFTHDDRAHALVGERSGQRYTLGRPVEIKLREATPITGGLLFEMLS
DPEPRDPNAPAPRLGMRGRGPGTGGNGPPKRGIGRPGGPKPPRGGTPKGVRKGKRR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaacacccaagaaaacccgccgccggattgccggacgaggccaccctgctggcc
ttcctgcgtgacgccggatcggcggaaaagggcgatatcgcccgccacttcggcctcaag
ggcgaggaccgtcgcgccctgcgcgaaatgatccgcggcctcgaagccgccggcaaactc
ggcaagcgcggccgcaagggtttctccgaagccggtgccctgccccccgtcggcgtcgcc
gatgtggtcgagaaggacaacgacggcgagctctacgtccgcatggtcgaggcctcggcc
gatgcgcccaacgccctgctgatccccgacaagggaacgccgggccccgcccccggcctg
ggtgaccgcgttctcgccaagttcgagctcggcccgaacggctgggaagcccggctgatc
aagaagctcgacacgaacaacaaccgcgtcctcggcgtcatccggaaatccaacaaggag
acgcgggtcgagcccgtcgaccggcgctccaaggacgtcctgatcgtgcccgcggtgcag
gcgacggacctgcgcgacggcgacctggtgctggctgccatcgagaagtccgaccagcgc
tatggccacaagcggggcaagatcctcgagaccgtcggccgcgaggacgatccccgcgcc
gcctccctgatcgccatccacacccacggcgtgcccatgggcttctcggaggccgtggag
caggaggccgagaaccaggacctgccgacgctgaagggccgcgacgacctgcgcgacatc
cccttcgtcaccatcgaccccgccgacgcccgcgaccacgacgacgccgtctacgcccag
cgcgacgaggatccgaagaacgaggacggctggatcgtctgggtcgccatcgccgacgtc
gccgcctatgtccgccccaacaccagcctggaccgcgaggcgcgggccaagggcaactcc
acctatttccccgaccgcgtcgagccgatgctgcccgagcggctgtcgaacggcctgtgc
agcctgaaggaaggcgagaaccgcgcgaccctggccgtccgcatggtcttcgacagcgac
ggacgaaaactgggccacaaattccaccgtggcctgatgcgcagccacgccaagctcagc
tacgaacaggcgcaggccgcgatcgacggcgtcgagaccggcgggggcaccgacgacacg
accggcccgatcctggacgcgatcctgcggccgctgtggaacgcctaccacaccatgctg
aagggccggctgaagcgcgcccccctgcagatcgactcggccgaacggcgcatccggatg
tcgcccgacggcggcatcgcctcgatcgagaagcgtgtcagcctggaggcccaccgcctg
atcgaggagatgatggtccaggccaacgtctgcgccgccgagacccttgaggccaagcgg
acccccctgatcttccgcgtccacgacacccccagccaggagaaagtcttcaatctggcc
gacttcctgtcgaccctcggcaagccgtggaacaagggcgaggctccgaccaccaagcgg
ttcaacaagctgctggacgagacccgcgacggcccccacgccgaggtcgtcaacgaggtc
gtcctgcgctcccagatgcaggccatctacagccccgagaacgtcggccatttcggcctg
aacctggatcgctacgcccacttcacctcgccgatccggcgctattccgacctgatcgtg
caccggggcctgatccgggcgctgaacctgggcagcgacggcctgaccgaccgcgagatc
gccgaactgcccgccatcgccgaccaggtgacccagaccgagcggcggtcgatggccgcc
gagcgcgatgccatggaccgctacatcgccgccttcctcgaagaccgggtcggcgcgacc
ttcaccggccgcatcaccggcgtgacccgcttcggcctgttcgtccggctggacgagacg
ggcgccgacggcctcgtgcccgtctcgtcgctgggcagcgagtacttcacccacgacgac
cgcgcccacgccctcgtcggcgaacgctcgggccagcgctacaccctgggtcgtcccgtc
gagatcaagctcagagaggccacccccatcaccggcggcctgctgttcgagatgctgtcg
gaccccgagccgcgcgaccccaacgcccccgccccgcgcctcgggatgcgcggccgcggt
ccaggcaccggcggcaacggcccgcccaagcgcggcatcggccgtcccggcggtcccaaa
cctccgcgcggcggcacgcccaagggcgtccggaagggcaagcggcgctag
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