Brevundimonas subvibrioides: Bresu_1931
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Entry
Bresu_1931 CDS
T01291
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsb
Brevundimonas subvibrioides
Pathway
bsb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bresu_1931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsb03400
]
Bresu_1931
Enzymes [BR:
bsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bresu_1931
DNA repair and recombination proteins [BR:
bsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bresu_1931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADL01242
UniProt:
D9QHY4
LinkDB
All DBs
Position
1910353..1913805
Genome browser
AA seq
1150 aa
AA seq
DB search
MDGASVERRTDHELGGAPEGLDALVVAERLKSSGGIGVFVGRDYARANAFVQAFQFFAAD
IDVLEFPAWDCLPYDRLSPTSGVSAERMAALTALARRDPDERKPLLLVTTVAAAMQRTPP
RAVTTSAGFDAVVGLELDTAALETYFTTNGYMRASTVNERGEYAVRGGVIDVFPPGFEEP
VRLDMFGSELESIRTFDPATQRSTGQRRAVALSPVSEALLNAETISRFRTGYLNLFGAAG
DDPLYAAVSEGARRQGMEHWLPLLYPHLETLFDYLPDRAAIFLDHQGEAARAERWALTRD
AYEARREASKAKGGAANRALAPEQLYLPDADWNSALAGRQVRRLSPFDAAAEDAGGRLGR
TFAAERAQDSVNLFEAVAAHAAQLRAEGKRVLFASWSEGSSDRLGVMLADHGLEHVVAVR
DWADVQAASKDLYLRAILPVEHGFTTPEIAVISETDILGDRLARPKRKRRASNFLAEASA
LTTGDLVVHLDHGIGRYEGLKTLDIQEAPHDCLELLYAGDSKLYLPVENIDLLTRYGSES
DGVQLDRLGGAAWQGRKAKAKARLRDMAEGLIALAAKRALRVGEAITPPHGLFDEFCARF
PYDETDDQLNAIGDVLEDLGKGVPMDRLICGDVGFGKTEVAIRAAFVVAMTGQQVAIVCP
TTLLARQHFKTFSERFAGWPIKVRHLSRMVTARDAAETRAGLKDGSFEIVVGTHAVLSEQ
VGFKDLGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIREMSIIA
TPPVDRLAVRTYVAPWDAVMVREALLREKYRGGQAFYVCPRLSDLPDIEEFLRVQVPEIK
FVVGHGQMSPTQLEDVMSAFYDGSYDVLVSTTIVESGIDIPTANTLIVHKADMFGLAQLH
QIRGRIGRSKARAFAYLTVDPKRPLTLSAERRLQVLQSLDNLGAGFQLASHDLDQRGGGN
LLGDEQSGHIREVGVELYQQMLEDAVAELRQNGSEGVVDRGWSPAINVGAAVLIPEDYVS
DLNVRLSLYRRLSDAENNETREALAAELIDRFGPLPDEAKQLLRIVGIKASCKTACIERI
DIGPKGCVLTLRDNRFPNPVGLVGLIQKNHATWKIRPDQKVVVKGDWPTSEDRLKVAERI
TTDLARVARA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggacggagccagcgtggaacggcgaaccgatcacgaactgggcggcgcgccggagggg
ctggatgccctggtggtcgccgagcgcctgaaatcatcgggcgggatcggcgtgttcgtg
ggccgggactatgcgcgggccaacgccttcgtccaggcgttccagtttttcgccgcggac
atcgacgtgctggagttcccggcctgggactgcctgccctatgaccggctgagcccgacc
tcgggcgtctcggcggagcggatggccgccctgaccgcccttgcgcgccgcgatccggac
gagcgcaagccgctcttgctggtcaccaccgtcgccgcggcgatgcagaggaccccaccg
cgcgcggtgacgacttcggccgggttcgacgccgtggtgggtctggagctcgataccgcg
gcgctggagacctatttcacgaccaacggctatatgcgcgcctcgaccgtcaacgagcgg
ggcgagtatgccgtccggggcggggtgatcgacgtcttcccgccggggttcgaggaaccg
gtgcggctcgacatgttcggctcggagctggaatcgatccggaccttcgatccggcgacc
cagcgatccacgggccagcggcgcgccgtggccctgtcgcccgtctccgaggccctgctg
aacgccgagaccatcagccgcttccggaccggctacctgaacctgttcggcgctgcgggt
gacgatcccctctacgcggccgtcagcgagggcgcgcggcggcagggcatggagcactgg
ctgccgctgctctatccgcatctggagacgctgttcgactatcttccggaccgtgcggcg
atcttcctggaccatcagggcgaggccgcgcgggcggaacgctgggcgctgacccgcgat
gcctacgaggcgcggcgcgaggcgtccaaggccaagggcggggcggccaaccgcgcgctg
gcccccgagcagctgtatctgccggacgcggattggaactccgccctggccggccgtcag
gtgcgtcgtctgtcgcccttcgacgcggcggccgaggacgccggcggacgtctggggcgg
accttcgcggccgaacgcgcgcaggacagcgtcaatctgttcgaggccgtcgcggcccac
gccgcccagctgagggccgagggcaaacgagtcctgttcgcgtcctggagcgaaggctcg
tccgatcgtctcggcgtcatgctggccgatcacgggctggagcatgtcgtcgccgtgcgc
gactgggccgatgtccaggcggcgtcgaaggacctgtatctgcgggccatcctgccggtg
gagcacggcttcaccacgcccgagatcgccgtcatctccgaaaccgacatcctcggcgac
cggctggcgcggccgaagcggaagcgccgcgcctccaacttcctggccgaggcctcggcg
cttacgaccggcgacctcgtcgtccacctggatcacggcatcggccgctacgaaggcctg
aagaccctcgacatccaggaagccccgcacgactgcctcgagctgctctacgccggggac
agcaagctctatctgcccgttgaaaacatcgacctgctgacccgctacggatccgaatcc
gacggcgttcagctggaccggctgggcggcgcggcctggcaggggcgcaaggccaaggcc
aaggcccgtctgcgcgacatggccgaggggctcatcgccctggccgccaagcgggcgctt
cgcgtcggcgaggcgatcacgccaccgcacgggctgttcgacgagttctgtgcccgcttc
ccctatgacgagaccgacgaccagctgaacgccatcggcgatgtgctggaggatctcggc
aagggcgtgccgatggatcgcctgatctgcggcgatgtcggcttcggcaagaccgaggtg
gccatccgtgccgccttcgtggtggccatgaccggccagcaggtcgcgatcgtctgcccg
acgaccctgctggcccgccagcacttcaagaccttctcggagcggttcgccggctggccc
atcaaggtgcgccatctgtcgcgcatggtcaccgccagggacgctgccgagacgcgtgcg
ggtctgaaggacggcagcttcgagatcgtcgtgggcacccatgcggtgctgtcggagcag
gtcgggttcaaggacctgggcctcgttatcgtcgacgaggagcagcacttcggcgtcaag
cacaaggagaagctcaagagcctccgcgccgacgtccacctgctgaccctgaccgccacc
ccgatcccgcgcaccctgcagatggcgctgtcgggcatccgtgagatgtcgatcatcgcc
accccgccggtcgatcgcctggcggtgcggacctatgtcgcgccttgggatgccgtcatg
gtgcgcgaggccctgctgcgcgagaagtatcgcggcggccaagccttctatgtctgtccg
cgcctgtcggacctgccggatatcgaggagttcctgcgcgtccaggtgccggagatcaag
ttcgtcgtcggccacggccagatgtcgccgacccagctggaagacgtgatgagcgccttc
tacgacggcagctatgatgtgctggtctccaccaccatcgtcgaaagcggcatcgacatt
ccgaccgccaacacattgatcgtgcacaaggccgacatgttcggcctggcgcagctgcac
cagatccggggacgcatcggccgctcaaaggcccgcgccttcgcctatctgacggtcgat
cctaagcggccgctgaccctgtcggccgagcggcgcctgcaggtgttgcagtcgctcgac
aacctcggcgccggcttccagctggccagccacgatctggaccagcgcggcggcggcaat
ctgctgggcgacgagcagtccggccacatccgcgaggtcggggtcgagctgtaccagcag
atgctggaggacgcggtcgcagagctgcgccagaacggcagcgagggcgtggtcgatcgc
ggatggtcgccggccatcaacgtcggcgcggcggtcctgattcccgaagattacgtctcg
gacctcaacgtccgtctcagcctttatcgccgtctgtccgacgccgagaacaacgagacg
cgcgaggccctggccgccgagctgatcgaccggttcgggcccctgccggacgaggccaag
cagctgcttcgcatcgtcggcatcaaggccagctgcaagacggcctgtatcgagcgcatc
gatatcgggcccaagggctgcgtcctgacgctacgcgacaaccgcttccctaatcccgtg
ggcctggtcgggctgatccagaagaaccacgcgacctggaagatccggccggaccagaag
gtcgtggtcaagggtgactggccgacatccgaggaccgtctgaaggtcgccgagcggatc
acgaccgacttggcccgggtggcgcgggcgtga
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