Bipolaris sorokiniana: COCSADRAFT_140279
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Entry
COCSADRAFT_140279 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03420
Nucleotide excision repair
bsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COCSADRAFT_140279
03430 Mismatch repair
COCSADRAFT_140279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsc03400
]
COCSADRAFT_140279
Enzymes [BR:
bsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COCSADRAFT_140279
DNA repair and recombination proteins [BR:
bsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COCSADRAFT_140279
MMR (mismatch excision repair)
Other MMR factors
COCSADRAFT_140279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
ADDB_N
AAA_12
AAA_11
BTB_BTBDG
SbsC_C
DEAD
Motif
Other DBs
NCBI-GeneID:
19131156
NCBI-ProteinID:
XP_007698918
JGI:
Cocsa1_140279
UniProt:
M2TAF9
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MDALLHGLNDAQKSAVTSPANVVQVLAPPGSGKTKTLTARVAYHINHERLQPWNIIVCTF
TIKAAREMKERIRGFVGDKLEAKLILGTFHSVARRFLFRYGQEIGIDKNFGIADTSDSSA
ILKRIVTRYQYTIEPGHARSRISKLKAQGVTADAFAATAKNANDNEFAMIYSSYQEHLAA
SNLLDYDDLLIRCVDLLKKSPSCVSTIQAVLIDEYQDTNNIQYELMSLLAQKTRRITIVG
DPDQSIYSFRSAEIKNLLRMRTDYPESIVINLENNYRSSGYILNSAMAVIEQDESRPQKS
LIATHGAGEQPTLRHLVSANVEAKWIVEEICRTRTLSAGLLDFGDYAILVRSSPLTLQIE
RALGQAGVPYRMVAGTKFFDRAEIKILLDYLRVVSQPEHNDAVARVINVPSRKVGDVTVK
ALLEEAEMSKITLWKLVLDIAQGKRRPKSKVSTQAQKGIDQFVNVILSSREKLIPAKDDV
CDLFGLITHISNKISFLSYLKQSHKENWQDRWANVEELVNQATQMATAVANGEEISDDAL
PVAEGIEQRADSAADILSKFLANVTLSSAADQEGTEQNQVTISTIHAAKGLEWPVVFMPA
IYNGSIPHSRADDQDEERRLLYVGMTRAQALLYLSCPVKQSGQEQTTLSRFISDRKVQKF
FSERGPDLAFKRSIITDLARILRRDCPSTADLDRARDSMERPEDDKYPATRDEIDGNDPA
WGASWDEKRTSSKLGSDGPDQALKRRRIDGLGSHSRESVSVTMNRTSSYSTSMTTMQSMN
AGFTSARDLGDLQAMQREAERIRTLASTQGAQSSKAEAKAVRAKPAKPRATGQGAITSFF
KRSNSAISEQSEHESSTAGPSLQRSQSCLTSNTPLHDISNVQSSTPRPFRPLSIPEHKVT
SQRILNKPKRSESESETQNTRYFRIRLSFSIDIAHDVNEPGTKWGGTEENIGCKKDHATV
ERKAQFHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggacgcattgctgcatggcctaaacgatgcacagaagagcgcagtcaccagccctgca
aacgtcgtgcaggtgcttgctcctcctggctcgggcaagacaaagacactcactgcgcgt
gtcgcgtaccacattaaccacgaacgactgcagccatggaatatcatcgtatgcaccttc
accatcaaggccgcccgggagatgaaggagaggattcggggcttcgttggcgacaaactg
gaagccaagctaatattgggcaccttccactcagttgcccgtcgctttctgttccgctat
ggccaagagatcggaattgacaagaactttggcattgccgataccagtgacagttccgct
attctcaaacgcatcgtcacgcgttatcaatataccatagagcctggccatgctcgttcg
aggatttccaagctcaaggcccagggcgttacggcagatgcttttgccgcgactgccaaa
aatgcaaacgacaacgaatttgccatgatctactcgtcttatcaggagcacctggccgca
tccaatttgctcgactacgacgatctcttgatacgctgtgtcgatctgctaaagaagtcg
ccctcgtgcgtttcgacgatacaggctgtgctcattgatgaataccaggataccaacaac
atccagtatgagttaatgagcttgctggctcaaaagactcggcgcatcacaatcgttggc
gatccagatcagagtatttacagttttcgatctgccgaaatcaagaacctgcttcggatg
cgcactgattatccggaatctatcgtcatcaatctggagaacaactaccgctcatccggc
tacattctgaattcggcaatggctgtgattgaacaggatgagagccgaccacagaaatcg
ctgattgccacgcatggtgctggcgagcagcccactcttcgccatctggtatcggcgaat
gtcgaggcaaaatggatcgttgaggagatatgcagaacgagaacacttagtgctggactc
ttggattttggtgactatgccatattagtgcgctcatcgccactcacactccagattgaa
cgagcgctcggacaggctggggttccctatcgtatggtggctggtaccaaattcttcgat
cgagccgagatcaaaatactactggattacctgcgcgttgtcagtcagccagaacataat
gatgccgtggcgcgtgtgatcaatgtaccttctcggaaagttggcgatgtcaccgtcaaa
gcgctactggaagaagcagagatgagcaagatcacactttggaagcttgttctcgacatt
gctcaaggaaaaagaaggccaaaaagtaaagtgtctacacaagcacaaaagggtattgac
cagtttgtcaacgtcattttgagttctcgggaaaagcttattcctgccaaagatgacgtg
tgcgacctcttcgggctcataactcacatctcgaacaagatatcgtttctgtcatatctc
aaacagagtcacaaggaaaactggcaagaccgatgggcgaatgtcgaggagctcgtcaat
caggcgacacaaatggccacagccgttgccaacggagaagagatatcggacgatgcattg
cctgtagcagaaggcatagaacagcgagccgatagcgcggccgatatcctttcgaaattc
ctcgccaatgtcacgttgtcgagcgcagcggatcaagagggtacagagcaaaaccaggtc
accatttccactatccatgcagcaaaaggtctcgaatggcctgtagtcttcatgcccgcc
atatacaatggttccattcctcactcgcgagcagacgaccaagatgaggaacgaaggttg
ctgtatgttggtatgacgcgtgcccaagcgttgctttacctcagttgccctgtaaagcaa
tcaggacaagagcaaacaaccctttcacgatttatttcggaccgcaaagtacagaagttt
ttcagcgagcgagggccagatctggcgttcaaacggagtatcatcaccgacctagcacgg
attctgcgaagggattgcccttcgaccgcagatctcgatcgtgctcgtgattcaatggag
cgaccagaagatgacaaatatccagcgacacgagacgagattgatggcaatgatccagcc
tggggtgcatcgtgggacgagaagcgcacaagttccaagctaggtagtgacgggccggat
caagccctgaagcgacggaggatcgatggcctgggctcccactctagagaaagcgtatca
gtcacgatgaaccgcacctctagctactccacctccatgaccacaatgcagagcatgaat
gcaggattcacaagcgcccgggatctgggcgacctacaagcgatgcaaagagaggcagag
cgtatccgtacgctagccagtactcaaggcgcacagagcagcaaggcagaagccaaggca
gtccgggcaaaacctgccaaaccacgtgcaacaggccaaggtgctatcacatcattcttc
aaacgatcaaatagcgcaatatccgagcaatcagaacacgaatcatccacagcaggccca
agcctacagcgctcgcaatcatgcttaacaagtaacacgccactacacgacatttccaac
gtacagtcttcgacaccgcgtccctttcgaccactctcgataccagagcacaaagtaacg
agccaacgcattctcaacaaaccgaagaggagtgagtctgagagcgagacacagaacaca
cgatatttcaggatcaggctttcattcagcatcgacattgcacacgacgtcaatgagcca
ggcacaaaatggggcggcacagaggagaacattgggtgcaagaaggaccatgcaaccgtg
gagcgtaaagcacagttccatgcctaa
DBGET
integrated database retrieval system
