Bipolaris sorokiniana: COCSADRAFT_157073
Help
Entry
COCSADRAFT_157073 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_157073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_157073
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
COCSADRAFT_157073
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
19131804
NCBI-ProteinID:
XP_007696203
JGI:
Cocsa1_157073
UniProt:
M2TIY1
LinkDB
All DBs
Position
Unknown
AA seq
791 aa
AA seq
DB search
MDSFKTLQTEISAALKPTTRSAAAIGKADIPFQRSLNPEAGTQLDAQNARLLHLAQRLLQ
NAAASSDAVGPKLPDVEAIDANWRGVVDVIDSLLEKADTSLDEYTGVVKRLSPASEQAAV
KPRPNIADRKIIPKPQLQFEHVPTNDETGGFRPLATSKPHAKIPLEECLKTFRDKRGREQ
YPHPYQTEIEEYEYPANVYEYAEPQQYKPFESTTATLVDTPEALATMLSELKTAKEIAVD
LEHHDNRSYIGMVSLMQISTRDKDWIVDTLKPWRRKLECLNEVFADPSILKVLHGAYMDI
MWLQRDLGLYIVGLFDTYHAARALGYPGASLAYLLERHVKFTAQKQYQLADWRIRPLSPE
LFEYARADTHFLLYIYDNMRNELVEKSDFSNPDKNKVHDVLEKSKETSLQRYEHPIYDSE
TGLGSSGWYKLISRTPVQFTPEQFAVFRAVHRWRDDLGRKEDESPLFIMPNHAVFSVARA
MPADKAALFNAIQHVSHIIRSHAEELVGVVVEAKKEGLHGPELHTTLQTIEDMLKAERAG
PETAVETMKKAPATVGQTTSLARGIHTSAARAPGSEFWGKLWKKDAASQPTQHLSTIDID
LALPLPPLTAQVFADANGTATSTLKAEKPQHTFVPKEMRPAEDQQTDTFVVKHLGGGKKR
KRGDAQEQAPSLQSLDSMTRDEIMLDAPEESSEAIQAREKAARKAARKQKKKEEAAAQAA
ARNGDEAVFDYANAKSVLHAEDEDPKAKKKDKKDKKKKKAGFTAFAGMADAPKGLPRAQK
EVAGRSKTFKS
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggactcctttaaaacgctgcagacagagatctcggccgcgctcaaaccaaccaccagg
tctgccgctgccattggcaaggcagacatccctttccaaaggtcgctaaatcccgaggct
ggcacccagttggacgcccaaaatgcgcgcctccttcacctcgcgcagcgccttctccag
aatgctgctgcgagctcggacgctgtaggtcccaagctacccgatgtcgaagccatagac
gccaattggaggggggttgttgatgtcatcgacagcttgcttgagaaggccgacaccagt
ctggatgagtacaccggcgtggtcaagcggttgagtccggctagtgaacaggccgccgtg
aagccccgccccaacattgccgacaggaagatcattccaaagccgcagctccagtttgag
cacgtgccgaccaacgacgagactggtggcttccgcccactcgccacatccaagccacac
gcgaagattcccttggaagaatgtctgaagacattcagggacaagcgcggacgggaacaa
tacccgcatccctaccaaacagaaatcgaagagtacgaatacccagcaaacgtctacgaa
tacgccgagccgcagcaatataagccttttgaatccacaaccgcaactctagtcgacacg
cctgaagcgctggctaccatgctctctgagctgaagacagcaaaggaaatcgccgtggat
cttgaacaccatgacaatcgctcctatattggcatggtttcgttgatgcagataagcact
cgcgacaaggactggatagtggatacactgaaaccttggcggcggaagttggagtgctta
aatgaagtctttgcggatcccagcattctcaaagttttacatggtgcttacatggatatt
atgtggctgcagcgcgatctgggactctacattgttggcctcttcgatacctaccatgct
gcccgagcactgggctaccctggcgccagtttagcctacttgctcgagagacacgtcaag
ttcacagcccagaaacagtaccaacttgcagattggcgcataagaccgctcagcccagag
ctcttcgaatacgcacgcgcagatactcatttccttctctacatctatgacaacatgcgc
aatgagctggttgagaagtccgacttttcgaaccccgacaagaacaaggtccatgatgta
cttgaaaaatccaaggagacatcattacagcggtatgaacaccctatctacgacagcgaa
acaggactcggatctagcggctggtataagcttatctcgcgaaccccggttcaattcact
cctgagcaatttgccgtcttccgggcggtgcatagatggagggacgatctcggaaggaaa
gaagatgagagcccgctatttatcatgccaaatcacgccgtattctctgtagcccgcgca
atgccagcagacaaggccgcactcttcaacgccatacaacacgtttcacacattatccga
tcccatgcagaagagcttgttggcgtagttgtagaggccaagaaagaaggtctgcatggg
ccagaattacacacaacacttcagactattgaagacatgctaaaagcagaaagagctgga
ccagaaactgcagtagaaacaatgaagaaggctccagccacagttggccaaaccacgtca
ctagcccgagggattcatacctctgctgctcgggctccaggttcagagttctggggcaag
ctgtggaaaaaggacgcggcctcgcagccaacgcaacatctttctacaatcgatattgac
cttgcccttcccttaccacctctgacagcacaagtctttgccgacgcaaacggaaccgcc
acatctacactaaaggccgagaaaccgcaacacacctttgtaccaaaggagatgagaccg
gcggaagatcaacaaaccgacacatttgttgtgaagcacttgggcggaggaaagaaacga
aagcgaggtgacgctcaggagcaagcaccttctttacagtctctcgattcaatgacgcgg
gacgaaattatgctggacgcacctgaagaaagctcagaagccatacaggcccgggaaaag
gctgcaaggaaagctgcaaggaaacagaagaagaaggaagaagccgctgcccaagctgca
gcacgcaacggtgatgaggctgtctttgattatgcaaatgctaagtcagtgctgcatgct
gaagacgaggacccgaaagcgaagaagaaggacaagaaagacaaaaagaagaagaaggca
gggttcacagcatttgcaggcatggcggatgctcccaagggattgccgagggcgcaaaag
gaggttgcgggccggagcaaaacgttcaaatcttga
DBGET
integrated database retrieval system
