Bipolaris sorokiniana: COCSADRAFT_162040
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Entry
COCSADRAFT_162040 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03013
Nucleocytoplasmic transport
bsc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCSADRAFT_162040
03015 mRNA surveillance pathway
COCSADRAFT_162040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_162040
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
COCSADRAFT_162040
mRNA cycle factors
P-body specific factors
COCSADRAFT_162040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
FliD_C
Motif
Other DBs
NCBI-GeneID:
19132149
NCBI-ProteinID:
XP_007701820
JGI:
Cocsa1_162040
UniProt:
M2SZT2
LinkDB
All DBs
Position
Unknown
AA seq
1204 aa
AA seq
DB search
MERHRKRELRELNIRAWDGDQDIFAVQASLDSSMKKNTAFIKRLRTAINAPAQAQFLQEI
RALSLHKYLSEIISACYEGLCKLKTPGEIAAGVEIVSALHQRFGPAEFTGYIGWYMGRGL
ATPDKSHLKTLAQDVREREEKERLARQRVLLRVATELWLVGVLRSLDDVTRPEEASKGKD
NGKLVEGSTKTKSRAENADAEPFPLEVLKDMLGHDREHVNLPLVVIFVKAFAWDILGTKP
PSAEGRKTVNDDGTTVPEKNGDLSGAEEEDEASKDPPLISPELQQRFKNILSRYFEDVKA
HLLRDQKHILSQGRKNAEAYVKSGEVFEDRQSNYEKQMKSQEKLIANAQILADALNADMP
DLKEKDGSANTGDGSIGLIKAGEYLRGQSDGAGIWEDEEERRFYENLIDLKDRVPGILLE
EVKKKKADGDEQVGKKIEPKAESPEKEAADNVADSKVADGDDQSTAIANKSVGAQVDALL
ARLPELATKDAVDQTAMDFCFLNSKASRNRLIKAVQEIPKGRSDLLPLYSRLIATLGKYM
SDVPQGLVSYLDEEFRSLQRRKSKDFLGQVRTQNVRYLAELTKFGVVPEHVIFHCLKVSL
DDFSRMNIEIICNLLENCGRYLLRNPETSPRMASFLETLQRKKGAQVIGQQERMLIENAV
YYVNPPQRAAIEQKERTPIELFLRKIMYQDLTRRSLDKTIKQIRKMHWEEEDVVNLLHKV
FAKPGKIKYSNIHLLAVMLGTIHRFHQDFAISVVDDLLESITFGLELNDFKFNQRRISEV
KYLGELYIYRLVDSPLIFDTLYKLLNYGWEGGYIRPGVYNPLDLPDDYFRIRLVCNLLET
CGMYYDKGAAKKKLDFFLTFLQYYVCMKETLPMDVEFIVQDAYNLVRPQWKMITDPEEAS
RAFAEAVKQNYQTTATDKPVEPDDDDVSASDDELDGPDDEDVEMPEGEGDKSSGEEEDES
EDDEPVKQASSDEEEEHIVVTRQEDERDPEADAEFDRELAKLMSESAESRKHDRKPVFDV
PLPMRRAREAPVNSEDSGGEAPAPVAPPSSQTMKFSLLSKRGNRTQTRSIDLPSDSTFAV
AMRNKQQADTEERQRIKSLVLNYNEAREDADDTTGDSPFLYTLQPNTNGKHTKSFQGLDK
TPNPYAQPRLDKAGTNRSNQRARKLQLSDVNWYDPCFSPRESRLGSRTTSTFAHTPPSAL
TSKR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggagcggcacagaaagcgagagctgcgtgaactcaatattcgcgcctgggatggcgac
caagatatctttgccgtccaagcctcactcgactcgtccatgaaaaagaacaccgccttt
atcaagcgcctccgaaccgccatcaatgcacctgcccaagcccagttcctccaagaaatc
cgcgccttgtccctccacaaatacctctccgaaatcatttccgcctgctacgaaggtctg
tgcaaactcaagactccaggagaaattgccgccggtgttgaaattgttagcgctctgcac
caacgttttggccccgccgaatttactggatatattggctggtacatggggaggggactt
gcaaccccggacaagtcacacctgaaaaccctcgcacaggatgtgcgcgagcgggaagaa
aaagagcgcctggcacgccagcgtgtgcttctacgtgttgctacagaactctggcttgtg
ggcgtcctgagaagcctggatgacgtaacccgtcccgaagaagcgagcaagggcaaagac
aatggcaagcttgttgagggctcgacaaagacaaagtctcgcgcagaaaatgctgacgct
gagcctttcccgctggaagtcttgaaggacatgctggggcatgaccgtgaacacgtcaac
ttgcctttggttgtcatatttgtcaaagcttttgcatgggatatactcggcaccaaacca
ccttctgcagagggccgcaagactgtcaatgatgatggaaccacagtgcccgaaaagaac
ggtgacttgtctggcgccgaggaagaagatgaagccagcaaagacccgccgcttatttcc
ccagaactgcagcagcgattcaaaaacattctcagccgttactttgaagatgtcaaagca
catctccttcgcgatcaaaaacacatacttagccaaggccgcaagaatgccgaagcatat
gtcaaatctggagaggtctttgaagatcgccagtccaactatgagaagcagatgaagtcg
caagaaaagctcattgcaaacgctcaaatcttggctgacgcgctgaatgcagatatgccc
gacttgaaggaaaaggacggctctgcgaacacgggtgatggctcgattggtctaatcaaa
gctggcgaatacctacgtggtcaaagcgacggagctggtatttgggaagacgaggaagaa
cgtcgattctacgagaacctaattgacttgaaagaccgcgtcccgggcattttgctcgag
gaagttaagaagaagaaggctgatggcgatgagcaagttggcaagaagattgagcccaag
gctgagagccccgaaaaggaagcagccgacaatgttgctgatagtaaagtggccgatggg
gatgaccagtccactgccattgccaacaaatctgttggcgcacaggtcgatgctcttttg
gcacgcctaccagaacttgcaaccaaggatgcagtagaccagactgcaatggacttttgc
ttcttaaactctaaagcttcacgcaatcgcctcatcaaggctgtccaggaaattccaaaa
ggacggtccgacctactgcctctttattctagactgattgcaacactcggcaagtacatg
tctgatgtcccgcaaggactagtgtcgtacttggatgaggagtttagaagcctgcaacgg
cgcaagtccaaagactttcttggccaagtgcgtacacagaatgttcgctacctcgccgag
ttgaccaagttcggtgtcgttcccgagcacgtcattttccattgtctcaaggtcagcctg
gacgacttttcacgcatgaacattgagattatttgcaacctgttggagaactgtggtcga
tatctactccgcaacccggaaacatctcctcgcatggcctctttcctggaaactctccag
cgcaagaaaggggcccaggtcatcggccagcaggagcgtatgctgatcgaaaacgccgtc
tactacgtgaaccctccacaacgtgccgcaattgaacagaaggaacgcaccccgattgag
cttttcctacgtaagatcatgtaccaggacttgacccgtcgttcgctcgacaaaaccatc
aagcagattcgcaagatgcactgggaggaagaagacgtggtcaatctccttcacaaagtg
tttgcaaagccaggaaagatcaagtacagcaacattcaccttctcgccgtgatgctagga
accattcatcggttccatcaagactttgccatttccgtcgtcgatgacctactcgaatcc
atcaccttcggattggagttgaacgacttcaagttcaatcagcggcggatctcggaagtc
aagtatctcggagagctgtatatatatcggcttgttgattcgccgcttatatttgacact
ctctacaaactcttgaactacggctgggagggtggatatatacgacctggagtctacaac
cctctcgatctcccagacgactacttccgcatccgcttggtctgtaacctcctggaaaca
tgtggaatgtactacgacaaaggtgccgcaaagaaaaagctcgatttcttccttaccttt
ttgcagtactacgtttgcatgaaggagaccctgcccatggatgtagagttcattgttcag
gatgcatacaatcttgttcgtccgcagtggaagatgatcaccgacccagaagaagcttca
cgtgcttttgctgaagctgtcaagcaaaactaccagacaacagcaaccgataagcctgtg
gagccggatgatgatgatgtttccgcatccgacgacgagctggatggcccagatgacgag
gatgttgagatgccagaaggggaaggcgataaatcatctggtgaggaagaagacgagtca
gaagatgatgaacctgtcaagcaagcttcatccgacgaggaagaggagcacatcgtcgtg
acacgccaggaagatgaacgcgacccggaggctgacgccgagttcgatcgtgagcttgct
aagctcatgtctgagagcgcagagtcgcgcaagcatgatcgaaagcctgtatttgatgtg
ccgttacccatgcgacgcgctcgagaggctccagtaaattccgaagacagtggaggcgaa
gcaccagctccagttgctccaccttcatcacagactatgaagttctcgctgcttagcaaa
cgtggcaatcgcacgcaaacccgatctattgacctaccttcagactcaacttttgctgtc
gccatgcgcaacaagcaacaagccgatacagaggaacgacagcgcatcaagagccttgtt
ttgaattacaacgaagctcgcgaggatgccgacgatacaactggtgattcaccatttctt
tacacccttcagcctaacaccaatgggaagcatactaaatcatttcaaggtctggacaag
actccgaatccatatgcgcagccgcgccttgacaaggctggtaccaatcgcagcaaccaa
cgcgcaagaaagctacaactgtcagatgtcaactggtatgatccctgtttctcccctcga
gaaagtcgccttgggtctcgcacaacgtctactttcgcacatactccgccatcggcgttg
acatcaaagcgttga
DBGET
integrated database retrieval system
