Bipolaris sorokiniana: COCSADRAFT_164565 Help Entry COCSADRAFT_164565 CDS       T03124                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism bsc  Bipolaris sorokiniana Pathway bsc03020   RNA polymerase bsc03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:bsc00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     COCSADRAFT_164565   09124 Replication and repair    03420 Nucleotide excision repair     COCSADRAFT_164565  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:bsc03021]     COCSADRAFT_164565    03400 DNA repair and recombination proteins [BR:bsc03400]     COCSADRAFT_164565 Enzymes [BR:bsc01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      COCSADRAFT_164565 Transcription machinery [BR:bsc03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      COCSADRAFT_164565 DNA repair and recombination proteins [BR:bsc03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       COCSADRAFT_164565 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R Motif Other DBs NCBI-GeneID:  19132323 NCBI-ProteinID:  XP_007704682 JGI:  Cocsa1_164565 UniProt:  M2QX97 LinkDB All DBs Position Unknown AA seq 1737 aa AA seqDB search MPPGAPLQSKCPLRTIKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKL GTIDRMYSCATCKEDIQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFN HPDWQAAARTKDAKKRFDKIWRMSRTKNVCVQDVEESGKENKIPKIPHGGCGSRQPDTIR KEGLKLTGTWKQSKKDDDDGQGDRKEVITPKQAQTIFKLLSDNTLALLGLNADYARPEWM ILDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVAECQQEGSPQHVTAE FEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSART VITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPGANYVIKADGV RLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLN LSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLLGV YKMTRRDNFIPIEQVMPIMMWVPDWDGILPEPAILKPRPLWTGKQIVSMAFPREVNIEKK EDDSTPSKDNDIKDKSLMIKGGQLIYGQVTKKIVGASAGGVIHIVFNELGSDAAVKFFNS CQRICNWWLLHYGFSFGVGDTIPDPGTSEKIASEISKSKVKVEDIIATATKDQLEPLPGM TIRGTFESKVQKFLNEGREGGGTAAQNSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQ AVEGQRIPYGFKYRTLPHFSKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTA VKTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAHIEKQSMDIIMS SEPAFEAAYKLDVLTTDQPEIPVWKLESSPLFQGDVDVQRALDEEFEAIKSDREYLRANA SEDDLESFQLPLNIARMIRSAQARFGINPEKAASNLHPIETIKQVRETLDRLVVIRGTDE LSREAQDSATYLFKAHLRARLAFKKLAVEHRLNKEALSYVLGELEDRFLKAAVAPGEMVG VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIAANIKTPSMLVRQADSKA SQQQAKLLRSTIELTTLRSLTQAVELYYDPEIQSTLVEDDQDMVESYFILPEEDEVIESQ SKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQVMRVRFIWDQNL QKDDEDEDERDERWMRKLEKHLLDDVTLRGVRGVERAFIREHTVTVEKEDRSLMHSKNND LCKEWVLDTTGTSLAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAGLLKELGMVLSFD GSYVNHRHMALLVDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVEILLEAAGFGELD DCRGVSENIMLGQLAPMGTGEFDVVMDNAMLLTMVEDNSKAMGAAAGNYVVGGADTPYLN SPTYDGGTGIGSYDQVSFSPIAPTGGSGDVGGFTDYGGTYGGGLSPFDGGRSPGSGFTGM SPGFTSPVSPGFSPTSPGYSPTSPGIASPRFAATSPGYMASPTSPHYSPTSPRYGSPTSP SYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSPTSPQYSPTSPQYSPTSPQ YQAGSDRRSPTSPTSPQYSPTSPRYSPTSPAGAFSPTSPRYSPTSPGPAYSPTSPKQ NT seq 5214 nt NT seq  +upstreamnt  +downstreamnt atgcctccgggcgcgccactccagtcaaaatgtccgctccggacgatcaaggagattcag ttcggtctgctctcccctgaggagatcaaggccatgagcgttgtccatatcatctaccca gaaaccatggacgagcagaagcagaagccacgcgagcaaggtctcaacgaccccaagctt ggcaccattgaccgcatgtactcgtgcgcgacctgcaaagaagacatccaggtctgcccc ggtcactttggccacattgagttgcacacgcctgtttttcacgttggatttgtcgtcaag atcaagaagctcctcgagaccgtctgccacacttgtggcatgatcaaggctgacttcaac catcccgactggcaggcagccgccagaaccaaggatgcgaagaagcgcttcgacaagatc tggcgcatgtcacggactaagaacgtgtgtgttcaggatgtcgaagagagtggcaaggaa aacaagatccctaagatcccccatggcggctgtggcagcaggcagcccgataccatccgc aaggagggtctcaagctcacaggaacctggaaacagagcaagaaggatgacgacgacggt cagggcgaccgtaaggaagttatcacccccaagcaggcgcagacaatcttcaagctactg tctgacaacacgcttgccctgctcggtctaaacgccgactacgcccgtcccgaatggatg attcttgatgtccttcctgtgccgcctcctccagtcagacccagtatctccgtcgatggt actggtcaaggtatgcgcggagaagacgacttgacatacaagttgggagacattatccgc gccaaccagcgtgtagccgagtgtcaacaagagggctcgccacagcacgtcacggctgag tttgaagctcttgtgcaataccatgttgcaacatacatggataacgatgccaacggtgtt ccgcaagccatgcaaaagtccggtcgtcctctgaagacgatccgtggacgattaaaggga aaggagggccgtcttcgtggcaacttgatgggaaagcgtgtcgacttctccgcacgtaca gtcatcactggtgaccccaacctgtcgttggaccaagttggtgttcctcgttccattgca cgaacgctcacctaccctgaagttgtgaccaagttcaacatcagcaaattgaccaacctg gtacgcaacggtccaaaccagcatcctggtgccaactatgttatcaaggccgacggcgtt cgtctcgacctcaagcacaacaagaatctcgacgacttgcgactgcaatacggatggaag gtcgagcgtcacattgacgatgacgatgtcatcatcttcaaccgtcaaccctctctgcac aaggagtccatgatgggtcatcgcgtgaaagtcatgccttattccaccttccgtctcaac ctatccgtcacatctccttacaacgccgatttcgatggtgacgagatgaatcttcacgtt cctcaaagcgatgaaactcgtgctgaaatccagaacctgtgcatggtgccaaagcagatt gtatcgccccagaaaaatcagcccttgatgggtatcgtgcaggacacgcttcttggtgtt tacaagatgactcgtcgtgacaatttcattcctatcgaacaagtcatgcccatcatgatg tgggtccctgattgggacggtatcctgcctgagccagccatcctcaagccccggcctctc tggaccggtaagcagattgtcagtatggcttttcctcgtgaggtcaacatcgagaagaag gaagatgactctacgccgagcaaggacaacgacatcaaagacaagagtttgatgatcaag ggtggccagctcatctatggtcaagtcaccaagaagattgtcggtgcttcggctggcggt gtcattcacattgtgtttaacgaactcggctctgacgcagctgtcaaattcttcaactct tgtcagcgaatctgcaattggtggcttcttcactacggcttcagtttcggtgtgggtgac accattccggatcccggcacctctgaaaagattgcgtctgagatttcgaagtccaaggtc aaggttgaggacatcattgcgacggcaacaaaggatcagcttgagcctttgcctggtatg actatccgcggtactttcgagtccaaggttcagaagttcctgaacgaaggtcgtgaaggt ggtggtactgccgcccaaaacagcttgaaggatttcaacaacgttgtccagactgtcgtc tctggttccaagggttctacagtcaatatctcccaaatggttgccctcgtcggtcagcaa gccgtggagggtcagcgtattccgtacggtttcaagtacaggacgttgccacatttctca aaggacgactactcacccgagtctcgtggtttcgtcgagaactcttaccttcgtggtctt acgccttctgagttcttctttcacgccatggctggtcgtgaaggtttgatcgatacggct gtcaagacggccgagacaggttatattcaacgtcgtttggtcaaggcgcttgaagatgtc atggtcaagtacgatggaactgtccgtaactcaatgggagacattgttgagttcatctat ggtgaagacggtcttgacggtgctcatatcgagaaacagtcgatggatatcatcatgtct tcggagcctgccttcgaggctgcatacaagctcgacgtcctgaccactgaccaaccagag attcctgtgtggaagctcgagagctctcccttgttccaaggtgacgtcgacgtgcagcgc gctcttgacgaagagttcgaggctatcaagagcgaccgtgaatatcttcgtgcaaacgcc agcgaagatgatcttgagtctttccagctgcctctcaacattgcacgcatgattcgctct gctcaagcgaggttcggtatcaacccagagaaggctgctagcaacctccatccaatcgag accatcaagcaggtccgcgagactcttgatcgcctagttgtcattcgtggtaccgacgaa ctttccagagaggctcaggacagcgccacataccttttcaaggctcacttgcgggcacgt ctcgctttcaagaagcttgcagttgaacatcgtctcaacaaggaggcactgagctacgtg ctgggagaattggaggatcgcttcctcaaggctgctgttgcgcctggtgagatggtcggt gtacttgcagcccagtccattggtgaacccgccacgcagatgacactcaacactttccat tttgctggtgtgtcttccaagaacgttacactcggtgtgccacgtctcaaggaaattctg aacattgctgcaaacatcaaaaccccttctatgcttgtccgccaagcagactccaaggca agtcaacagcaggcgaagctactgcgaagcactatcgagcttacaaccctccgatcactg acgcaagccgttgagctttactatgatcctgaaattcaatctacgcttgtcgaagatgat caggacatggttgagtcctacttcatcttgcccgaagaggacgaggtcatcgagtcgcag tctaaatggttgctccgtatcattctcgatcgtaagaagttgttggataagagtatcacc attggtgaagttgccggcaagatcaaggaagagttcaagcccaatcttgcagtcatcttt agtgacgagaatgcggatgaacaggtcatgcgtgtccgtttcatctgggatcagaatctt caaaaggacgacgaggatgaggatgagcgagacgagcgatggatgcgcaagcttgagaag catcttcttgacgacgtcacccttcgtggtgttcgtggtgttgagcgtgctttcattcga gagcacactgttactgtcgaaaaggaagacaggtccctcatgcactcaaagaacaacgac ttgtgcaaggaatgggttcttgacactactggtacttccttggctgaagtgctggccatt gagggtgtggacgcaactaagacatactccaactctttcattgaaatccttggggtactt ggtattgaagcagcccgagctggtcttctcaaggagttgggtatggtcttgtcctttgac ggttcttatgtcaaccatcgccacatggcattgcttgtcgacatcatgtgccaacgcggt cttcttatggccatcactcgtcacggtatcaaccgaaacgatactggtgctctgatgcgt tgttctttcgaagagactgttgaaattcttctcgaggctgctggctttggtgagcttgat gactgccgcggtgtttccgaaaacattatgcttggtcagcttgcacccatgggtaccgga gagtttgatgttgtcatggacaatgctatgctgctcaccatggtcgaggataactccaag gcaatgggcgccgctgcaggcaactacgtggttggtggtgcagacacaccgtacctcaac tcacctacgtatgatggcggtactggcattggttcctatgaccaggtgtccttctcgccc attgctcctacaggtggcagtggcgatgtaggtggctttacagactacggaggcacctat ggtggtggcctaagtccgtttgatggaggtagaagtccaggctccggtttcaccggcatg tctccgggcttcactagccccgtgtcgccaggcttctctccgacctcgcctggctactcg cctacttctccaggaatcgccagtcctcgttttgctgctacatctccggggtacatggcg tctcctacgtcgccccactactctccgacttcgcctcgctatggctcgcctacgtcgcct tcgtactcgcctacatctccagctggctactccccgacgtcacctcaatactcaccaacg tcgccaaactacagcccaacatccccaacatttatgggcggtgctacttcacccgcgtac agtccgacgtcgccacagtacagcccgacttccccccagtacagtcctacaagtccacag taccaagcaggcagcgatcgtcgctctcccacttctcccacatcccctcagtacagcccg acgtctccccgatactcgcccactagcccggctggtgccttctccccaacctccccaaga tacagcccaacttctccgggtccggcgtactctcccacatctccaaagcaatag

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