Bipolaris sorokiniana: COCSADRAFT_177734
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Entry
COCSADRAFT_177734 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COCSADRAFT_177734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsc03021
]
COCSADRAFT_177734
Enzymes [BR:
bsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
COCSADRAFT_177734
Transcription machinery [BR:
bsc03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
COCSADRAFT_177734
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Zea_mays_MuDR
Motif
Other DBs
NCBI-GeneID:
19133102
NCBI-ProteinID:
XP_007695259
JGI:
Cocsa1_177734
UniProt:
M2SSE7
LinkDB
All DBs
Position
Unknown
AA seq
1473 aa
AA seq
DB search
MEAPRTTAKQQVVDRIPARIKHIQFGIYSNQDIVNQAVLEVSDRNVYDLQPAADNTRTLT
ANGPMDTRMGISSKQGTCATCGEGLDTCNGHFGHIKLALPAFHVGYLKHIIEVLNCICKD
CSRVLLDEVERRRYLRSMRRPDMDTLRKGAVTKRILEDCRKKKTCPYCNGLQGTVRKVPG
HPLKIIHNRYDAFNRSTAKTKKAPPGKIEFDQSFETAKSANPDLDKHLKKAVDDMHPLRV
LNLFKKISPEDCELLAMIPEDARPEMLIWEYMPVPPVALRPSVMQEGGATEDDVTNKIGD
ICHISSIIRAGLARGFPLQILMEQWDFLQLQIAMYINSDAPGLKQQGLQKTMRGFSQRLK
GKGGRFRQNLSGKRVDFSGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRR
LVRNGSNKYPGANYILDDQGPNKDRGKISLIALSRFDTKGERLEGASKRLKIGDIVERHI
EDGDIVLFNRQPSLHKLSILSHRAKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEE
ARTEATELMGVKYNLATPKNGTPIIAAIQDFITAAYLLSNKNNFFDRRTFCQIVNYMFNG
EGAFDPDTGKRHPIEIPPPVVWKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQFKNT
PDQPPDLNENDAYLVIRNSEVMCGVMDKATVGDGKKDSVFYVMMRDFGPDHAVQGMNRLS
KLSARWLSNNGFSLGISDVTPGEKLNKKKQDLVQEAYAKCDKLIKDFKEGKLQRDPGCDE
EQTMENRIGGILSGVRQAAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMI
GGARVADGFHHRTLPHFPKAARQPASKGFVSNSFFSGLTPSEFIFHAMSGREGLVDTAVK
TAETGYMSRRLMKSLEDLSAQYDDTVRNSSGTVVQFQYGDDNLDPVDMEGKAKPVHFDRT
FSHAVTSTWDNSESSLTPQEVREYTEARLNAQRNKYPRYALDGVTRLEYRDQTDRGIDQK
ESMRDFLDTVQDYVFKKAQKLETTLAYLGIVQPNDRKDKKQSAADAEKYSLADGIAKISE
RALDTFITLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVP
RIKEIINASSTISTPVIACELSNKISESAARIVKARVEKTYLRDVISYVEDVWHPNGAYI
AMRIDWDTINKLFVDVQPYEIAAAINAHKPLKWGKAGANVRISSSIIRVEVPDPNAAKKR
PVKTTRNHKEYFERVQQVKSLIPDVVIKGYPDCSRAIIKKESSPNAQGHYECQLLVEGYG
LQDCMTTPGIEPYNTKSNHVMEVKTVLGIEAARATIVREIGDVMGNMDIDPRHMQLLADV
MTFKGEVFGITRFGLQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSECIIMGQSV
KLGTGAMQVVRPLFLGEEIGEKRTMFEEGWEAL
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgccgcgcacgacggccaagcagcaggtcgtcgaccgcatccccgcgcgcata
aagcacatccagtttggcatatactccaaccaggacattgtcaaccaggccgtcctcgaa
gtatccgaccgcaatgtctacgatctccagcccgccgccgacaatacgcgcaccctcacg
gccaacgggcccatggacacgcgcatgggcatatccagcaagcaaggaacctgcgcgaca
tgtggcgagggactcgacacttgcaacggccactttggccacatcaagctggcgctgccc
gcattccacgttggctacttgaagcacattatcgaggtgctcaactgtatatgcaaagac
tgctcccgggtcctgcttgacgaagttgagcgccggagatatctgcgcagcatgcgccgc
ccggacatggacaccctgcgaaaaggcgcagtgactaagaggattctagaagactgtcgc
aagaagaagacctgcccttactgcaacggtctccagggcaccgtacgcaaggtccctggc
catccactcaagattatccacaaccgatacgatgctttcaatcgatccacagccaagacc
aagaaggcgcccccaggaaaaattgaattcgaccagtcgttcgaaaccgcaaagtctgca
aacccagatctggacaagcacttgaaaaaggctgtcgacgatatgcacccgctgcgcgta
ttgaacctctttaagaaaatatctcccgaagactgcgagctgctagccatgatacctgaa
gacgcgcgaccggagatgttgatctgggaatacatgccagtgccgcccgtggcgttgcga
ccatcagtcatgcaggaaggaggtgcgacggaggacgacgtgaccaacaagatcggagat
atttgccacatcagcagtataatacgcgcgggacttgcacggggctttccgctccagatc
ctaatggaacagtgggatttcctgcagctgcagattgccatgtacatcaacagcgatgcg
ccaggtctcaagcaacagggtctgcaaaaaaccatgcgtggattttcccagcgtctcaag
ggcaaaggcggtcggttccgacaaaatctttctggaaaacgtgtcgatttctctggtcgt
acagtcattggtccagatccaaacttgagcattgatgaagtcgcggtgccagagcgtata
gctaagaatctgacgtatcctgaaaaggttacacgctacaatattgacaagttgcggagg
cttgtcaggaacggctccaacaagtaccccggagccaactacatcctcgatgaccagggt
ccgaacaaagaccgaggcaaaatttcccttattgccctttcgcgattcgataccaaaggc
gaacgcctcgagggcgcctcgaaacgactcaaaattggcgacattgttgaacgccacatc
gaggatggcgacattgtcctcttcaatcgacagccgtctctacacaagctcagtattctg
agtcatcgagcaaaagtgcgaccatggagaacgtttcgactgaatgaatgtgtatgtaat
ccttacaacgccgatttcgacggtgacgagatgaatttacacgttccccaaaccgaagaa
gctcggacagaagctaccgagctcatgggtgtcaaatacaatctggctaccccgaaaaac
ggaacaccaatcattgccgctatccaagatttcattacagctgcgtaccttctaagcaac
aagaataactttttcgaccggcgcaccttttgtcagattgtaaattacatgttcaatggc
gaaggagcattcgatccggacactggcaagaggcacccgattgaaattccacccccggtc
gtatggaagcctcaagcactctggaccggaaagcaggtcttcaatttactgatgcgcccg
tacaaaaagtgcagagtcctagtcaacctcgaagctgcatgcaagcaattcaaaaatacc
cctgatcagcctcccgacctgaacgagaacgatgcctaccttgtcattcgcaactctgag
gtcatgtgtggtgttatggacaaagcaaccgtcggtgacggtaagaaggactctgtcttt
tacgtcatgatgcgagatttcggccccgaccacgctgtccaaggaatgaaccggctctcc
aaactttctgcgcgatggctcagcaataacggtttctcactcggaatcagcgatgtgact
ccaggagaaaaacttaacaagaagaagcaggatcttgtgcaagaagcgtacgccaagtgc
gacaagctgatcaaggacttcaaagaaggaaagctgcagcgcgatccaggttgtgatgaa
gagcaaacaatggagaacaggattggtggtattctgtccggcgttcgtcaagctgctggt
gatatttgtttcgaagagttgagtaggtggaactctcccctactcatggccaagtgcggt
tcaaaaggttccaacatcaacgtctcccagatggttgcttctgtcggacaacagatgatt
ggcggtgcacgtgtagcggatggcttccaccaccgaacattacctcacttccccaaggct
gcacgtcagccagcgtccaagggtttcgtcagtaacagtttcttctccggcctcacccca
tctgagttcattttccacgcgatgagtggtcgtgaaggtctggttgataccgctgtcaag
acggccgagaccggttacatgagtagacgattgatgaagtctcttgaagatctttccgca
cagtacgatgacactgtcaggaactcttctggtactgttgtgcagttccagtacggtgac
gacaaccttgaccccgtggacatggaaggcaaggcaaagcctgtgcattttgaccgaacc
ttctcacatgctgtcacttctacttgggataactcagagtccagtctaacgcctcaggaa
gtccgcgaatacaccgaagcaagactgaacgcccaacgaaacaagtatcctaggtacgca
ctagacggtgtaacgcggctagagtatcgagatcagaccgatagaggaattgaccaaaag
gagtccatgcgtgacttcctcgacacggtacaggattacgtcttcaagaaagcccaaaaa
cttgagacgacgcttgcgtacctcggcattgtgcagcccaatgataggaaggataagaaa
caatcggcagccgatgcggaaaagtacagtcttgctgatggtatcgccaagatctcggag
agagccctcgatactttcatcaccctgtgtttgacaaaatatcatcgctcccgtgtccag
cccggtcatgctgtaggagctatcggagctcagtccattggtgaacccggtacgcaaatg
acgctcaaaactttccattttgctggtgtcgctggtatgtccatcacccaaggtgtaccc
cgtatcaaggaaatcatcaacgcctcttctaccatctccactcctgtcatcgcttgcgag
ctttccaacaagatctccgagtctgcggcgcgaattgtcaaagcacgtgtcgaaaagact
tacctccgcgacgtcatctcgtacgtcgaagacgtttggcaccctaacggtgcctacatt
gccatgcgcattgactgggataccataaacaagcttttcgttgacgtacaaccctacgag
attgctgcggctatcaacgcccacaagcctctcaaatggggcaaagccggcgcaaacgtg
cgcatctcttcctccataatccgcgtcgaagtccctgaccccaacgccgcaaagaagcga
cccgtcaaaacaacacgcaaccacaaagaatactttgagcgcgtccaacaagtcaaatcc
ctcattccggatgtcgtcataaaaggctacccagactgctcccgtgccattatcaaaaaa
gaaagcagccccaacgcccaaggccactacgaatgccaactcctcgtcgaaggctatggc
ctccaagactgcatgaccacccctggaattgaaccttacaatacaaaatccaaccacgtc
atggaagtcaagacagtcctcggcatcgaagccgcccgcgctaccatcgtccgcgaaatc
ggcgacgtaatgggcaacatggacatcgatcctcgtcacatgcagctcctcgccgacgtc
atgacctttaaaggcgaagtcttcggcatcacgcgtttcggtctccaaaagacgcgagat
tccgtcctccaacttgccagtttcgaaaagacgcccgatcaccttttcgaagctgcggcg
cgcggaaagacggatacgattgatggagtcagcgagtgtattattatgggccagagtgtt
aagctgggtaccggtgcgatgcaggttgtcagaccgctgtttttgggtgaggagattggg
gagaagaggacaatgtttgaggaggggtgggaggctttgtga
DBGET
integrated database retrieval system