Bipolaris sorokiniana: COCSADRAFT_178265
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Entry
COCSADRAFT_178265 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_178265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_178265
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_178265
03009 Ribosome biogenesis [BR:
bsc03009
]
COCSADRAFT_178265
03016 Transfer RNA biogenesis [BR:
bsc03016
]
COCSADRAFT_178265
Enzymes [BR:
bsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCSADRAFT_178265
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
COCSADRAFT_178265
Spliceosome [BR:
bsc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
COCSADRAFT_178265
Complex C
U4/U6.U5 tri-SnRNP related factors
COCSADRAFT_178265
Ribosome biogenesis [BR:
bsc03009
]
Eukaryotic type
Pre-60S particles
Helicases
COCSADRAFT_178265
Transfer RNA biogenesis [BR:
bsc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
COCSADRAFT_178265
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
eIF3_p135
ATPase_2
nSTAND3
DUF5388
Motif
Other DBs
NCBI-GeneID:
19133128
NCBI-ProteinID:
XP_007696045
JGI:
Cocsa1_178265
UniProt:
M2RPA3
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDDDMFEVFEGGPSKDAAPRKTKKRQANGDVKSPVPVEDASMSDAPAEAQGGANENSAAE
TLKKRQKRDAEPEPIVTDDFETEQSREVAAAAGLQAQTQDGQAVVLSHQVRHQVALPPDY
DYVPISEHKPPTEPARTWPFALDPFQQVSIASIQRNESVLVSAHTSAGKTVVAEYAIAQC
LKNNQRVIYTSPIKALSNQKYREFMAEFGDVGLMTGDVTINPTATCLVMTTEILRSMLYR
GSEIMREVAWVVFDEVHYLRDKSRGVVWEETIILLPDKVRYVFLSATIPNSMQFAEWITK
THSQPCHVVYTDFRPTPLQHYFFPAGADGIHLVVDEKGMFREENFQKAMSSIADKAGTDA
KDFMAKRKGKGKDKKTNTGGNREQTDIYKIVKMIMVKSYNPVIVFSFSKRECENYALAMS
SLAFNDESEKAMVTKVFNSAIEMLSEEDRQLPQIQNILPLLRRGVGVHHSGLLPILKETI
EILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGVSQRWVTPSEFIQMSGRAGRR
GLDDRGIVIMMIDEQMEPAVAKEIVRGQQDNLNSAFHLGYNMILNLMRVEGISPEFMLER
CFYQFQSTAGVSNLEKQLEELEQEKLNTTIIDEAAVKDYYNLRQQLDTHTKDMRDVIMHP
NYCLPFLQGGRLVKVSYKDHDFGWGAVVAFAPRKANKGEVLPPQESYIVDVLLIVGSDNK
FAPVVNDGLPPGVRPPAPGDKGKMEVVPVVLNCIESIGHLRVFLPNDLKSTEQRNNVRKA
LNEVEKRFPDGIAILDPIENMNIKDESFKRLLRKIEVLESRLLSNPLHNSPRLPELYSQY
AKKIAIGEKIKNTKKEIANALSVIQLDELKSRKRVLRRLGFIDDADVVQLKARVACEIST
GDELVLSELLFNRFFNELTPEQCAACLSCFIFEEKTQEVPALKEELAKPYREIQQQARVI
AKMSQESKLTLNEEEYLKSFKYELMEVVFAWSKGATFSEICKMTDVYEGSLIRLFRRLEE
LLRQIAQAAKVMGSEELEQKFTAALELVRRDLVAAQSLYL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatatgtttgaagttttcgagggcggcccctccaaggacgctgcgccccgc
aagaccaagaagcgccaggccaacggcgatgtcaagtcgccagtgcctgtcgaagatgct
agcatgtcggatgcgccagcagaagcacaaggtggcgcaaacgaaaacagcgcagccgag
acactgaagaaacggcagaagcgtgatgccgagcccgagcctattgttaccgacgatttc
gagacggagcaatcgcgcgaagtcgctgctgctgctggactgcaggcacagacccaagac
ggacaggccgtagtactttcacatcaggtccgacatcaggtcgccttaccgccggactac
gactatgtccccatttctgagcacaagcctccgacggagccggcgcgcacatggcccttt
gcactggatcccttccagcaggtctctattgcctcgatccagcgcaacgagagtgtcctc
gtatcagcgcatacttcagccggaaagacggtcgtggcagagtacgctattgcacaatgt
ctcaagaacaatcagcgagtcatctacaccagtcccatcaaggctctcagcaaccagaag
taccgagagttcatggcagagttcggcgacgtcggtctcatgacaggtgatgtcaccatc
aacccaaccgccacatgtttagtcatgacaacggagattctacgatccatgttatacaga
ggatccgaaatcatgcgtgaagtagcttgggttgtgtttgatgaggtgcactaccttcgt
gacaagtcgagaggtgttgtatgggaagagactatcattctgctccctgacaaggtccgc
tacgtctttctgtccgccaccattcccaactcgatgcagtttgccgaatggatcaccaaa
acccatagccagccatgtcacgtcgtttacaccgatttccgtccaaccccgctacaacac
tatttcttccctgctggtgccgatggtatacatttggtggttgatgagaagggcatgttt
cgcgaagagaacttccaaaaagctatgtcgtccatcgctgacaaggctggaactgacgcg
aaagactttatggccaaacgcaagggcaaaggcaaggacaagaagaccaatacaggcggc
aacagagagcagacggacatttacaagattgtcaagatgatcatggttaagagctacaat
cccgtcattgtgttcagcttcagtaagcgcgagtgtgaaaactacgcgctagctatgagc
tcccttgcgttcaacgacgaatccgagaaggccatggtcacaaaggtgttcaatagcgct
attgagatgctttcggaagaggaccggcaattacctcagatccagaatattcttcctctt
cttcggagaggtgttggggttcatcattctggattacttcccattctcaaggaaactatc
gaaatactgttccaggagggcttgattaaagtactcttcgcgacagagacgttctccatc
ggtctcaacatgccggccaagactgttgtgttcacaagtgtacgcaagttcgatggagtg
tcccaaagatgggttacgccttcggaatttattcaaatgtccggtcgagccggtcgtcgt
ggtcttgacgaccgtggtattgtcatcatgatgattgacgaacagatggagcctgctgta
gccaaggaaattgtacgcggtcagcaggacaatttgaactcggctttccatcttggctac
aatatgattctgaacttgatgcgagtggaaggcatctctcccgagttcatgttggaaagg
tgcttctatcaattccagagcacagctggtgtctccaatctagaaaaacaacttgaggaa
ctcgagcaagaaaagctaaacaccaccatcattgatgaagccgccgtcaaggattactac
aatctgcgacagcaactggacactcacaccaaggacatgcgcgacgtaattatgcacccc
aactactgcctgccattcctgcagggtggccggctcgtcaaggttagctacaaagaccac
gattttggatggggtgcagttgtagcatttgcccctcgcaaagcaaacaagggcgaagtc
ctaccacctcaagagtcatatatcgtcgacgttctgctcatcgtcggcagtgataataaa
tttgcccctgtagtgaacgatggcttgccccctggtgtccggccgcctgcgcctggggac
aagggcaagatggaagtggtacccgtagtcctgaactgcattgagtcaattggtcacctc
cgcgtattcctgccaaatgatctcaagtcaacggaacagaggaacaatgttcgcaaggcg
cttaacgaagtcgagaagcgtttcccagatggtattgccattttggatcctattgagaac
atgaatatcaaggacgaaagcttcaagaggcttctaaggaaaattgaagtactggaatct
cgtctcctgtcgaatcctcttcacaactcgcccaggttacctgagctttacagccaatac
gcaaagaaaattgcaattggtgaaaagatcaaaaacaccaaaaaggagatcgccaacgca
ttgtccgttattcagcttgatgaactgaagagcagaaaacgtgtactgcgtcgactaggc
ttcatcgacgatgccgatgtcgtccagctgaaagcccgcgttgcctgcgaaatcagcacg
ggtgacgaattagttctcagcgaactgctcttcaaccggttcttcaatgagctgacaccc
gagcaatgcgccgcctgtctgagttgtttcatctttgaggagaagacacaggaagtgcca
gcgctaaaagaagaactcgccaagccttaccgcgagatccagcagcaagccagagtcatc
gccaaaatgtcgcaagagagtaagctgacgctcaacgaggaggaatacctcaaatctttc
aaatacgagctcatggaggttgtgtttgcctggtcaaagggtgctactttctcggagatt
tgcaaaatgaccgatgtctacgaaggcagtctcattcgccttttcaggcgactggaggag
ttgctccggcagatagcccaagccgccaaagttatgggcagtgaagagcttgagcaaaag
tttactgcagcactggagctcgttcgtcgggatcttgtcgctgcccagtctctttacctc
taa
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