Bipolaris sorokiniana: COCSADRAFT_196484
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Entry
COCSADRAFT_196484 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K14408
cleavage stimulation factor subunit 3
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSADRAFT_196484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_196484
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
COCSADRAFT_196484
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
TPR_CcmH_CycH
TPR_19
HAT
Motif
Other DBs
NCBI-GeneID:
19133986
NCBI-ProteinID:
XP_007696143
JGI:
Cocsa1_196484
UniProt:
M2SN44
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MADEAELAFLEAQKEEEYDPSAGYNMPDAPTGQDEYDPTATFSAHSEQSESAPPESGANS
PPPTTEGEHGSQSQPPQAPAEASAAPQSKRPRTVGGFVDESEDEEEESAAQPQEANATLL
RATGDAESPQPSFTNTPNNTLPNPDVQLHSAQDLAPASVSAPIAVNEPAPSVASLPNGST
PVPDVTKPATPDVLNVASARPSVAPATPAPTSASLPKARLPQDRVGILEDRIAEDPRGDI
EAWLSLIEEHRRRHKHDDARAVFERFFKVFPSAGEQWVEYIQFETELDELPKVEHLFGRS
IPSAQYIGIYSAYIDFIRRRFNLTTDQNGQNRQTVTQAYEFVLNSVGIDVQAGKLWLDYI
EMLKTGPGVLGGSNWQDMQKMDTLRKVYQRAVSVPHNATLEIWRDYDKFEMSMNKVSGRK
QLQETSPAYMTARSAINVLDNNITRGVIRTTLPKLPPAAGFDGYEEYMNQVKLWKNWIQW
EKSDPLECATDNRELYNKRVLHLYKNALMALRFWPELWYEAAEWSYENNLQAEGDKFLND
GIEANPESCLLAFKKASQVEQRTDFEDGQAGIIAKGRAVREPYQKLLDTIYDLTAQVKKR
EEHSIARAKEQFEAQKQADEGARAIAQQNEDADDEDEVVAARRLKEKEDAFNSQLQAMSA
GYNAQTQNLKKTLTYAWIALMRAMRRVQGKGDPKGDVGGFRGIFTEARKKGKLLSEAYVA
SALIEHHCYQEPAAQKIFERGMKLFPEDEQFALEYIKHLIKLNDSTNARAVFETVVGKLT
AKPENVHRAKSLFAFFHDYEAQFGELAQITKLEQRMATLFPEDPQLHRFSQRFASSTFDP
ISVRHIISPRTQMRPVMPASMPPVMPSVMPSVEEQQPAPAMPPQPPPIVEQQRLASPAIA
NSPHLNNLHTVTNSPKRPLEDVEDVPQPRKLARGESPLKGAAGRRLDAARRNLATAGSTP
IGQAQGPPPLPRGINFLLSIIPPAHTYKETRFKADGLVSLLRDVAAIPVPPGQAIPQPQR
WGTTPTTAQQLQSIQEKYGNGGHIPMHAAMPGANPWGT
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggccgagctcgccttcctagaggcgcaaaaggaagaagagtacgaccct
tcagccggctacaatatgcccgacgcgcctacaggccaggatgaatacgacccgaccgcg
acattttccgcacactcagaacagtctgagtccgcgccgccagaatcgggcgccaattct
ccaccgccaactaccgagggcgagcatgggtcgcagtcccagcccccccaggctcctgca
gaggcgtccgcagcgccgcagtccaagcgaccgcgcactgtgggtgggtttgtcgacgag
agcgaggacgaggaagaggagtccgctgcgcagccgcaagaggcgaatgctacactgctg
agagctacgggagacgctgagtcgcctcagccttcttttacaaacacaccaaacaataca
cttcccaacccagatgtacagttacatagtgcacaagacctggctcctgcatctgtttct
gctcctatcgctgtcaatgagcctgctccctctgttgcttctcttcctaacggcagtacg
cctgtcccagacgttactaagccagctacccccgacgtcttgaatgttgcttcagcccgt
ccctctgtagcgccagccactccggcgcctacttctgcttctctgccaaaggctcgtctt
cctcaggatcgagttggtattctcgaagatcgcattgctgaagatccgcgtggtgacatc
gaagcgtggttgagtctaattgaggagcaccgcaggcgacacaagcacgacgatgcgcga
gctgtattcgagcgcttcttcaaagtctttccttcagcaggcgagcaatgggtagagtac
attcagtttgaaactgaacttgacgagctgccaaaagtcgagcatctctttggtcgttcg
attccttcagctcaatatatcggcatatactctgcttacattgactttatccgacgtcgc
ttcaacctcaccactgaccagaatgggcagaatcgccagacagtcacccaagcttatgag
tttgtcctgaactcagttggtattgatgttcaagctggtaagctatggcttgattacatc
gagatgctcaagactgggcctggtgttcttggtggcagcaactggcaagatatgcaaaag
atggacactttgcgaaaagtttaccagcgcgccgtgtcagttcctcacaacgctactcta
gaaatttggcgagactatgacaagtttgagatgagcatgaacaaagtttctggtcgcaaa
caactacaggaaacttcgcctgcatacatgactgctcgcagtgctatcaacgttcttgat
aacaacatcacaagaggtgtcatccggactactttgcccaaacttccacctgctgccggt
ttcgatggctacgaggagtacatgaaccaggtcaagttgtggaaaaactggatccaatgg
gagaagagtgacccactcgaatgcgcaaccgacaaccgtgaactgtacaacaagcgtgtt
ctgcacctttacaagaacgccctgatggcccttcgtttctggccagagctgtggtacgag
gcagctgaatggtcttacgagaacaacctgcaggctgaaggtgacaagtttctcaatgac
ggcatcgaggcaaaccctgagagctgcctgcttgccttcaaaaaagctagccaggtcgag
cagcgtaccgatttcgaggatggccaagctggtatcatcgccaaaggcagggctgtgcga
gaaccatatcagaagctccttgacaccatttacgaccttacagcacaggtcaagaagcga
gaggagcactctattgcgcgagcaaaggagcagtttgaagcccagaagcaagccgacgag
ggtgcgcgcgcaatcgcgcagcagaacgaggacgcagatgatgaagatgaggtcgttgct
gcacgacgattaaaggagaaggaagacgccttcaatagccagctccaagccatgtctgcc
ggatacaacgcgcagacccaaaacctcaagaagacacttacatatgcatggatagcgctc
atgcgtgcaatgcgtcgtgttcagggcaagggagatccaaagggggatgtcggtggcttc
cgtggtatcttcactgaggctcgcaaaaagggaaagctgcttagcgaggcctacgtagct
agcgcactcattgagcatcattgttaccaggaaccagctgcacaaaagattttcgagcgc
ggtatgaagctgtttccagaagatgagcagttcgcgttggagtacataaagcacttgatc
aagctgaatgactcaaccaacgcccgtgctgtcttcgaaactgtcgttggaaaactgaca
gccaagccggaaaacgtccatcgagccaagtctctttttgccttcttccatgattacgag
gctcagtttggtgaactagcccagatcaccaagctcgagcagcgtatggcaactctcttc
cctgaagatccccagttgcatcgcttctcgcaacgcttcgcaagctcaaccttcgacccc
atttccgtccgtcacatcatctctccccgcacacaaatgaggccagtcatgccagcatct
atgccaccagttatgccatcggttatgccctcggttgaagagcagcaacctgctcctgca
atgcccccacagccaccgcctattgtagaacaacagcgtcttgcgtctcctgccattgcc
aactcaccccacctcaacaaccttcacactgtcactaactcaccaaagcgcccactcgag
gatgtggaagacgtgccacaaccccgcaagcttgctcgtggtgagtcgcctctcaaaggt
gctgcaggtcgccgcctcgatgctgcacgccgcaacctcgctaccgctggctctacacct
atcggacaggcccaaggcccaccaccccttcctcgtggaatcaacttccttctcagcatc
attcctccagcacatacgtacaaggagacgcggttcaaggccgacggtcttgtcagcttg
ctacgggacgtggccgccattcccgttccccccggccaggccataccacaaccgcagcgc
tgggggaccaccccaacaacggcacagcagctccaaagcatacaggagaagtatggtaat
ggcgggcacattcccatgcacgcagccatgcccggcgcaaatccttggggaacttag
DBGET
integrated database retrieval system
