Bipolaris sorokiniana: COCSADRAFT_231755
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Entry
COCSADRAFT_231755 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12589
exosome complex component RRP42
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_231755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_231755
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
COCSADRAFT_231755
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
COCSADRAFT_231755
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
19134785
NCBI-ProteinID:
XP_007702798
JGI:
Cocsa1_231755
UniProt:
M2R2K2
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MAPQHALVSFSPVELFFLRRALTQTPPIRRDVTKGPRDFRSMRAEYDVLPTANGSARIAL
EDGTEALVGVKAEVEKTSQLPTLGEPEDVDMGDGADENKAKGQNAWVDMTVEIPGFREDD
ALPVFLASMLSESLLASGELKDRLYINRRFHWKLYIDILLLSPPLSYPLAMLSMTSHLAL
LTTRLPALKSEKDEDPLFDDDWDAAVPLYPKQAGTNKTAPQLGKPPVIILAMAVGANIIF
DPAPEELAVADAVLAVACTNSTNSATGARIVSIRTIDPPSHLTPPGVPNSMNTATGGTAP
TSTADALTQRELLATSGVWTPPRGGMKRSLIAQVTKMVVENGGVAEEVIGALAAIEVG
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggcgccccagcacgccctcgtcagcttctcccccgtagagctgttctttttgcgcagg
gccctgacacagacgccccccatccgccgcgatgtcaccaaagggccccgcgactttcgc
tccatgcgcgcagagtatgacgtcttgcccactgcaaacggaagtgcgcgcattgccctc
gaggatggcacagaggcccttgttggcgtcaaggctgaagtggaaaagacaagccagctg
ccgaccctgggcgagccagaagatgtagacatgggcgacggcgccgacgagaacaaggcc
aagggccagaatgcgtgggtcgacatgaccgtcgagataccgggtttccgagaggacgat
gccctgcccgtcttcctcgcctcgatgctctctgagagcctgcttgcgagtggtgagctc
aaggaccggctctacatcaacaggcgctttcactggaagctctacatcgacatcctcctg
ctctcgccgcccctatcctacccgcttgccatgctctccatgacctcccaccttgctctt
ctcaccacacgcctccccgcgctcaagtcggaaaaagacgaagacccactcttcgacgac
gactgggacgcagccgtgcccctgtaccccaagcaggcaggaacaaacaagactgcgcct
caactagggaagccacccgtcatcatactagccatggccgttggcgcaaacatcatcttc
gacccggctccggaggagctagcagtcgcagacgctgtccttgctgtcgcatgcacaaat
tcgacaaactccgctacgggtgcgcgcatcgtctcgatacgcactattgaccctccgtcc
catctcacaccaccaggtgtgcccaactcgatgaacactgctactggcggtactgctccc
acgtcgactgccgacgcccttacgcagcgcgagctgctggcaacatcaggtgtatggaca
ccacctcggggcggcatgaagaggagtttgattgcgcaggtgaccaagatggtagtagag
aacggcggggttgctgaagaggtcattggcgcattggcagccattgaagttggctga
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