KEGG   Bipolaris sorokiniana: COCSADRAFT_231755
Entry
COCSADRAFT_231755 CDS       T03124                                 
Name
(RefSeq) hypothetical protein
  KO
K12589  exosome complex component RRP42
Organism
bsc  Bipolaris sorokiniana
Pathway
bsc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCSADRAFT_231755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bsc03019]
    COCSADRAFT_231755
Messenger RNA biogenesis [BR:bsc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     COCSADRAFT_231755
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     COCSADRAFT_231755
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 19134785
NCBI-ProteinID: XP_007702798
JGI: Cocsa1_231755
UniProt: M2R2K2
LinkDB
Position
Unknown
AA seq 358 aa
MAPQHALVSFSPVELFFLRRALTQTPPIRRDVTKGPRDFRSMRAEYDVLPTANGSARIAL
EDGTEALVGVKAEVEKTSQLPTLGEPEDVDMGDGADENKAKGQNAWVDMTVEIPGFREDD
ALPVFLASMLSESLLASGELKDRLYINRRFHWKLYIDILLLSPPLSYPLAMLSMTSHLAL
LTTRLPALKSEKDEDPLFDDDWDAAVPLYPKQAGTNKTAPQLGKPPVIILAMAVGANIIF
DPAPEELAVADAVLAVACTNSTNSATGARIVSIRTIDPPSHLTPPGVPNSMNTATGGTAP
TSTADALTQRELLATSGVWTPPRGGMKRSLIAQVTKMVVENGGVAEEVIGALAAIEVG
NT seq 1077 nt   +upstreamnt  +downstreamnt
atggcgccccagcacgccctcgtcagcttctcccccgtagagctgttctttttgcgcagg
gccctgacacagacgccccccatccgccgcgatgtcaccaaagggccccgcgactttcgc
tccatgcgcgcagagtatgacgtcttgcccactgcaaacggaagtgcgcgcattgccctc
gaggatggcacagaggcccttgttggcgtcaaggctgaagtggaaaagacaagccagctg
ccgaccctgggcgagccagaagatgtagacatgggcgacggcgccgacgagaacaaggcc
aagggccagaatgcgtgggtcgacatgaccgtcgagataccgggtttccgagaggacgat
gccctgcccgtcttcctcgcctcgatgctctctgagagcctgcttgcgagtggtgagctc
aaggaccggctctacatcaacaggcgctttcactggaagctctacatcgacatcctcctg
ctctcgccgcccctatcctacccgcttgccatgctctccatgacctcccaccttgctctt
ctcaccacacgcctccccgcgctcaagtcggaaaaagacgaagacccactcttcgacgac
gactgggacgcagccgtgcccctgtaccccaagcaggcaggaacaaacaagactgcgcct
caactagggaagccacccgtcatcatactagccatggccgttggcgcaaacatcatcttc
gacccggctccggaggagctagcagtcgcagacgctgtccttgctgtcgcatgcacaaat
tcgacaaactccgctacgggtgcgcgcatcgtctcgatacgcactattgaccctccgtcc
catctcacaccaccaggtgtgcccaactcgatgaacactgctactggcggtactgctccc
acgtcgactgccgacgcccttacgcagcgcgagctgctggcaacatcaggtgtatggaca
ccacctcggggcggcatgaagaggagtttgattgcgcaggtgaccaagatggtagtagag
aacggcggggttgctgaagaggtcattggcgcattggcagccattgaagttggctga

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