Bipolaris sorokiniana: COCSADRAFT_255534
Help
Entry
COCSADRAFT_255534 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
bsc
Bipolaris sorokiniana
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bsc03009
]
COCSADRAFT_255534
Enzymes [BR:
bsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
COCSADRAFT_255534
Ribosome biogenesis [BR:
bsc03009
]
Eukaryotic type
90S particles
Helicases
COCSADRAFT_255534
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
HA2_C
DEAD
HA2_N
OB_NTP_bind
AAA_22
AAA_19
AAA_24
Motif
Other DBs
NCBI-GeneID:
19135312
NCBI-ProteinID:
XP_007704943
JGI:
Cocsa1_255534
UniProt:
M2SQW2
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MPKFVPRQRKHKVIARRKNAADPSNGVNDANTAEILPVEQQERNAKKAALKEELTREAQG
KMSNKKKKRLDKYIDTKLKKEESLELLKKLAAQKVDTTLFQSSKKLGRGADTKREALRRA
LAESRAGINVDKNQELLLEEREIRDIEDDSSDEEEQVSASVSHSVPKSTARQAAAKPAHE
NEVSRERAQSPSPSEPETDTRKPTPEIPVVPQQTNGLFGSGLKRPLEVDDSGKPVIQVRK
RRKGQTTKPVAVEEEVEWEGFSSAEDNDNQMEEDDSATSSAESEDEGFDSEEGDSSGSEQ
SGSEEDSEDESDESDTSLDEDKKLAKKERTSAFKAWATQQRNEQVGFTPTNQLSFAPTPA
NFKPRAPEQDPLPPELETKTKTDATRKAFSVNVDRSPEIQESRLQLPIVAEEQKIMEAIH
NNDAVVVWGSTGSGKTTQVPQFLLESGYGAADGPTPGMIGVTQPRRVAAVSMAKRVGDEL
GDQGSKVAYQIRFDTTTSAKTAIKFMTDGVLLREITQDFVLTKYSAIVIDEAHERSVNTD
ILIGMLSRIVDLRAQMVKDDPKNKPLKLIIMSATLRISDFTENKRLFRSEPPPLIKAEGR
QYTVVNHFARRTQRDYVEEMYRKVCRGHRKLPKGGMLVFLTGQNEISQLAKQLKQAFPST
QGKEIKAGKVVVSPAETPLEVEDIELGAPTKFTDYEDDDGSDSEGSIIMGLDDEDDKEFE
IEDEKPEETVMNVHVLPLYSQLPTNQQLRVFESPPDGSRLIVLATNVAETSLTIPGIRYV
FDCGRAKEKKYDPVTGVQSFEVGWISKASANQRSGRAGRTGPGHCYRLYSSAVFERDFEE
YAVPEISRTPLEGVVLQLKSMGAPVVNFPFPTPPDRGSLQKAENLLSYLGALSIDGKVTK
LGHELSLYPLNPRFARMVAMGVAQNLVAETIALVAALSVPELIIPENKLGLREPTKDPDT
TRTEQDNIEAEERSQLRKAYNAAQAKMSINAKQSDCIKLSNAICAYAYEPNSQRFCEDMF
LNAKAMNEASQLRHQLTNIVRAHRPTAIGGYEAKLPAPSERNINILTQICAAGFIDQIAM
RADLAPVPPDLPRKPKTAIDVPYVTLFSSQTERSDNDDPQSKYVFLHPSSILARTPPAKM
PGYIIYSHLQRAATSTVHGSKTPKTRMHPLTPVTRPQIINIALNTPLLQASKPKGKIVEL
SKERRECEVEMSLVGEKGTQGWGLGIRKVVQKKEGNGRYVIERIVG
NT seq
3743 nt
NT seq
+upstream
nt +downstream
nt
gcatgcccaagtttgtgccccggcagcgaaagcacaaggtcattgcccgtcgcaaaaatg
ctgccgacccaagcaatggcgtcaacgatgcgaatacggctgagatattgcctgttgagc
agcaggaacgtaatgcgaagaaggcagcgctgaaggaagagcttacgcgcgaagcgcaag
gcaaaatgtctaacaaaaagaaaaagcgcctcgacaaatatattgatacaaaactcaaga
aagaagaaagcctcgagctgctgaaaaagcttgccgcccagaaagtcgatactaccttat
tccaaagttcaaagaagcttggtcgaggagcggatacaaagagagaagctttgaggcgcg
cgctggccgaaagtcgggctgggataaatgtggacaaaaaccaggaattgctactggagg
agcgcgaaatcagagacattgaggatgacagctcagacgaggaagagcaggtatcagcat
ctgtctcgcactccgtacccaaatctactgcgcggcaggccgcagcaaaaccagcacatg
agaacgaggtatcacgagaacgcgcgcagtcaccgtcgccatctgagccggaaaccgaca
cccgcaaacccacgcctgagattcctgtggtaccgcaacagacaaacggtctattcggaa
gtggattgaagaggcctctggaagtagatgattcaggaaagccagtaatacaagttcgaa
agcgtcgcaagggccagactacaaagccagttgcagttgaagaagaagtggaatgggagg
gttttagttcggccgaggacaacgacaaccaaatggaggaagacgactcggcgacctcca
gcgcggagtctgaagatgaaggctttgattccgaggaaggcgactcttcgggatcagagc
aaagcggatcagaagaggattccgaagacgagagcgatgaaagcgacaccagtctggatg
aagacaagaagcttgcaaagaaggaaagaacatcagctttcaaggcctgggcaacccagc
aaagaaacgaacaagtaggcttcactccgactaaccaactatctttcgcgcccactccag
cgaacttcaaacctcgagcccctgagcaagatcctctgcctcccgaactcgaaacgaaaa
caaagactgatgctactcgcaaagcattcagcgtgaacgtcgatcgatcgcccgaaatac
aagagtcaagactgcagctaccgattgtggccgaagaacaaaagatcatggaggcgatac
acaacaacgacgcagtggtagtttggggttccactggtagcggtaaaactactcaagtgc
cacaatttctgcttgagtcaggctacggagcagccgatgggccaacaccaggcatgatcg
gggtcactcaaccacgccgtgtagccgctgtcagtatggcaaaacgtgttggcgatgagc
ttggggatcaaggttctaaagtggcatatcagattcgctttgatacaaccacaagcgcca
aaactgctatcaagttcatgactgatggtgtcttgctaagagagataactcaggacttcg
tcttgacaaagtactccgctatcgtcattgatgaggcccacgagcgtagcgtcaacaccg
acattctcatcggaatgctcagcagaatagttgatctccgagctcagatggtgaaagatg
accccaaaaacaagcccctgaaactgatcattatgtcggctactctgcgcatatcagatt
tcacagaaaacaagcgcttgtttagaagcgagcctccaccgctcatcaaggccgaaggtc
gccaatataccgtcgtgaaccacttcgcgcgtcgcactcaacgagactacgtcgaggaaa
tgtaccgaaaagtgtgtagggggcaccgaaagctgcccaagggcggtatgctcgtctttc
ttaccggtcaaaacgagatttcgcagttagcgaagcaattgaagcaagccttcccatcta
ctcaaggcaaagagatcaaagctggcaaggttgttgtttctccagcagaaacaccgctgg
aagtcgaggacattgaattgggcgcaccgaccaagttcacagactacgaagacgatgacg
gttcagactctgaaggttcaataataatggggcttgacgacgaggatgacaaagaattcg
agattgaagatgagaagcccgaagaaaccgtcatgaatgtgcacgttctaccgctttatt
cacagttgcctactaaccagcagctgcgtgtcttcgaatcacctccagatggctctcgtc
tcatcgttctcgccacaaacgttgccgagaccagtttgacaatacccggtatccgctatg
tcttcgactgtggaagagcaaaagaaaagaagtatgatcccgttacaggcgtgcagagct
tcgaggttggttggatcagtaaagctagtgcaaaccagcgttctggtcgtgcgggtcgta
ctggacctggtcactgttaccgcttgtactcctccgcggtattcgagcgtgattttgaag
agtatgctgtgccggaaatatcaagaacaccgctagagggtgtggtgctacagctgaaaa
gcatgggtgctcctgtcgtcaacttcccgttcccaacaccaccggatcgtggaagcctac
aaaaggcagagaacctactttcatacctgggcgcactttctatcgacggaaaagtcacca
agcttggccatgagctttctttgtatcccctcaacccacggttcgcgcgtatggttgcga
tgggtgttgcgcagaaccttgtagccgagactatcgcattggtggccgccttgtcagtac
cagaactcattataccagagaacaaactcggactgcgggaaccaaccaaggatcctgata
ccactcgcactgagcaagacaacattgaagccgaagaacgctcacaactacggaaagcct
acaacgcggcacaagcgaagatgagcatcaacgcgaagcaaagcgactgcatcaagctca
gcaacgcaatctgtgcctacgcatatgagcccaactcgcaaagattctgcgaagatatgt
tcctcaacgcaaaagccatgaacgaagccagtcaactccggcaccaactcaccaacatcg
tccgcgcccaccgacccacagcaatcggcggctacgaagccaaactcccagccccatccg
aacgcaacatcaacatccttacccaaatctgcgcagccggcttcattgaccaaatcgcca
tgcgtgccgacctcgcccccgtcccccccgatctacccaggaaaccaaagaccgccatcg
atgtcccctacgtaaccctcttctcctcgcaaaccgagcgctccgacaatgacgatcccc
agtccaaatatgtcttcctgcacccctcctccatccttgcgcgcacaccgccagccaaaa
tgccgggctacatcatctactcgcaccttcagcgcgcggcgacatccactgtccacggca
gcaaaacaccaaagacgcgaatgcatcccctgacgcccgtgacgaggccgcagattatta
atattgcgctcaacacgcctttgttgcaggcgagtaagcccaaggggaagattgtagagc
tgtcaaaggagaggcgcgagtgcgaggttgagatgagtcttgtgggggagaagggaacgc
aggggtggggtttggggattaggaaggttgttcagaagaaggaggggaatgggcggtatg
ttattgagcggatagttgggtga
DBGET
integrated database retrieval system
