Bipolaris sorokiniana: COCSADRAFT_257030
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Entry
COCSADRAFT_257030 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSADRAFT_257030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsc03021
]
COCSADRAFT_257030
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_257030
Transcription machinery [BR:
bsc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
COCSADRAFT_257030
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
COCSADRAFT_257030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
Pfc11_Clp1_ID
VHS
zf_PCFS4
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
19135346
NCBI-ProteinID:
XP_007705039
JGI:
Cocsa1_257030
UniProt:
M2SR77
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MSLPAAEVAADFRDALQDLRMNSRPEISNLTLIAKENTEYAEAISNELQKHIQSTRPEWK
LPALYVLDSIVKNVGTPYTVYIGRNLYRTFMDAYLVMDQATRKNMEGLLKTWKMPVPESM
DPRPVFSADVTQDIENALAKFHAAQQQVRPQHALPPRPPSLNVAWRGTSTPPQSGPRYAA
PNDPRARPSYPSTPQYGPPAHAPTPPVSYAQPQQPPSPMSSIDLAGLKAEVTQLISTTQN
TFAQNPADAALRTKLSALLSLKQILDTQTLPPQQLEAVRQQIRALAPPAPTPSFAPSTPV
YPPQQTAAPSYPAQFSAVSASPVNVPPNVAQLLAGFRPPQSTPQPAPTPTPPVLNLAELL
KRVSSPAQSSSVPASAPFQPPFQAFPPPISTPVPAPQSAPPAQSGTPTTNLAALLAQFSK
PAAAPPSIQPTPVQSTPVSQLPLQPAAPPPALGSAEWLLKALSSVSGPTHVNGVPNALQQ
GTEQSVAPVGLLDQIELTTASMKKHRLHLISHLYEAKPNLCATCGRRFESTPEGKEKKAR
HMDWHFKVKDPDAAKRGVHRSWYIPEKEWIEYRELDETAPNQSSHPSSGSNAAKPKKQTK
DRYVSVPQDVTLQQAPCPICQEKFETQWNVEANDFVWMDALCVGGKVYHATCFEEYSKGI
GIEMPGTPDSVLGKRKADIGTNGEGKKVKAY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccagcagctgaagtagcagccgattttcgggacgcactgcaagatttgagg
atgaatagcaggcccgagattagcaatctaaccctcatcgccaaagagaatacagaatac
gctgaagctatatccaatgagctccagaaacatatccaatcgactcgtcctgaatggaag
cttcccgctctttacgtgcttgattccattgtcaagaatgtcggaaccccatatactgtc
tacatcggtcgcaacctgtaccgaacattcatggatgcttatctggtcatggaccaggcc
acccgcaagaatatggaaggcttgctcaagacgtggaagatgcctgtgcccgagtctatg
gatccacgcccagtgttctcagccgacgtgacgcaagatatcgagaacgcactggctaag
tttcatgcagctcaacagcaggtccggccgcaacatgcgcttccgcctcgtcctccatcg
ctcaacgtggcttggagaggtacatctacgccgccgcagagtggtccccgttatgctgcc
cccaatgacccgcgtgctcgaccatcatacccatcgacccctcaatatggacctccagca
catgctcctacacccccggtgtcctacgcgcaacctcagcagcccccttcgcctatgtcg
tccattgatttggctggactaaaggcggaagtcactcagctaatcagcactacacagaac
acattcgctcaaaacccagctgatgctgccctgcgtacgaagctttcggcgctcttatct
ctcaagcaaatcttggacacacagactctaccgccacaacaactggaagctgtacgtcaa
cagattcgagccctagcaccgcccgctccaacgccctcgtttgcaccgtcaacaccagta
tatcctccgcaacagacagcggcacccagttaccctgctcagttttctgctgtgagtgct
tcaccagtcaatgttccaccgaatgtcgcgcaacttcttgcgggcttcagaccaccacag
tcgacaccacaacctgccccaactccgaccccaccagttctgaacctagcggaattgttg
aagcgtgtatcatcgcctgcacaatcgagttctgtacctgcctcagctccattccagcca
ccgttccaagcattcccgccgcctatttctaccccagtacccgcgcctcaatccgctcct
ccagcacagtctggtacaccaaccaccaacttggctgcgttgcttgcccagttcagcaaa
cctgctgccgcaccaccctcaattcagcctacgcctgttcaaagcacccctgtatctcaa
cttccattgcagcctgcagctcccccaccagcccttggtagtgctgagtggctcctcaaa
gccctgagcagtgtatctggtcccacacatgtgaatggagttcccaacgcactccagcag
ggaactgaacaatcagtggcgccggtcggcttgctggaccaaattgaactcactaccgca
tcgatgaagaaacaccgtctccaccttatctcccatctgtatgaagccaagcccaacctc
tgcgccacttgtggtcgccggttcgagagcacgcctgagggaaaagagaagaaagctcgc
cacatggactggcacttcaaggtcaaggacccagatgcagccaaacgaggtgtacatcgc
agctggtacattcctgagaaggaatggatcgaatatcgtgaacttgacgaaaccgccccc
aaccagtccagccatccctcttcagggagcaacgcggccaagccgaagaagcagactaag
gaccggtatgtcagcgttccgcaggatgtgacactccagcaagcaccatgcccgatctgt
caagaaaaatttgaaacacagtggaacgtggaagcgaatgatttcgtatggatggacgca
ctgtgtgtgggcgggaaagtgtaccatgctacgtgttttgaagagtatagtaagggaatt
ggtattgagatgccgggcacgccagactctgtgcttggaaaaaggaaggccgatattgga
acgaatggagagggcaagaaagtcaaggcttattag
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integrated database retrieval system
