Bipolaris sorokiniana: COCSADRAFT_270468
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Entry
COCSADRAFT_270468 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03015
mRNA surveillance pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCSADRAFT_270468
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_270468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_270468
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_270468
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
COCSADRAFT_270468
mRNA cycle factors
Stress granule specific factors
COCSADRAFT_270468
Spliceosome [BR:
bsc03041
]
Complex C
Other components
Complex C specific factors
COCSADRAFT_270468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_occluded
DUF2800
PABC_AtC3H46
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
19135608
NCBI-ProteinID:
XP_007695897
JGI:
Cocsa1_270468
UniProt:
M2T126
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MSEVANSTSPVQDGADANGAQINTNVAAAQAEAPTPTSAAPAHNQNSASLYVGELDPSVT
EAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCR
IMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGF
VHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDV
SDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLY
VGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITS
AKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENKPGEKVTIKGEKKIL
GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQARNQLR
MQQQQQQQFGGIPQMFIAPGQQPMMFPAGGRGQMPFPAGMPGQQGGRGAGFPGGMPGQQG
GRGGPNGQQMPPMYMPPGMAPGAFPPSYMNQQYMQLAQAAQQAMGGRGGRGGVPMAPMPG
MPQVPMAGGPGMRGGQGFPPQGAGRGNMPQGGRPGQSPMPGYPQGGRGGPAGAGVDMSAL
SGAAPGQQKQMLGEALYPKIAEMQPELAGKITGMLLEMDNSELINLTSDEAALRAKVEEA
MSVYDEYVKNKEGEPEEKAPKEESKEEKA
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagtcgcaaactctacctcgcccgtccaggacggtgctgacgccaacggcgct
cagatcaacaccaacgtcgctgctgcccaggccgaagcccccaccccgacctctgcagcc
cctgcccataaccaaaactcggcttcgctctatgtcggcgagctcgacccttctgtcacc
gaagccatgctcttcgagctgttctcttccattggccaagtagcttccatccgtgtctgc
cgtgacgccgttacccgtcgctcgctcggttacgcctatgttaactacaacagctctgag
gacggcgagaaggccctcgaagagctcaactacactgttatcaagggcaagccttgccgt
atcatgtggtctcagcgtgaccccgctctgcgcaagaccggccaaggcaacgttttcatc
aagaacctggaccacgccattgacaataaggcgcttcacgataccttcgccgctttcggt
aacatcctcagctgcaaggtcgctcaggacgagcttggcaactccaagggttacggattc
gtccactacgaaaccgccgaggctgccaacaacgccatcaagcacgttaatggtatgttg
ttgaacgagaagaaggttttcgtcggccaccacattcccaagaaggagcgcatgagcaag
ttcgaggagatgaaggccaacttcaccaacatctacgtcaagaacatcgacctcgatgtc
tctgacgaggagttccgtgagctcttcgagaagcacggtgacatcacttctgcgtccatt
gctcgcgacgagcagggaaagagccgcgggttcggctttgtcaactacatcaagcatgag
gctgcctctgctgccgttgacgccctcaacgacactgacttccggggtcagaagctctac
gtcggccgtgcccagaagaagcacgagcgcgaggaagagctacgaaagcagtacgaggcc
gctcgcctcgagaagcagtctaagtaccagggtgtcaacctgtacatcaagaacctcaac
gatgacgttgatgacgagaagctgcgcgacatgtttactcctttcggtaccatcacctcc
gccaaggtcatgcgcgatgccatgcctgccgagcgctctgagacccctggcgacgagaag
aaggaggaggccaaggaggagtctgagaagactgaggagtctaacgagggcgctgatgac
aagaaggacgagaacaagcctggtgagaaggtcaccatcaagggcgagaagaagattctt
ggcaagagcaagggcttcggtttcgtctgcttcagcaaccccgatgaggctaccaaggcc
gtcaccgagatgaatcagaagatgatcgagggcaagcccctctatgttgctcttgcccag
cgcaaggacgtccgcaagaaccagcttgaggctaccattcaggctcgcaaccagctccgt
atgcagcaacagcaacagcagcagttcggtggcattcctcagatgttcattgcccctggt
cagcagcccatgatgttccctgctggcggccgtggtcagatgccattccccgctggtatg
cccggccaacaaggtggccgtggtgctggcttccctggcggcatgcctggtcagcaaggc
ggtcgtggcggccccaacggtcagcagatgcctcccatgtacatgccccctggcatggct
cccggtgccttccctccttcgtacatgaaccagcagtatatgcagctggcacaggctgca
cagcaagccatgggcggacgtggtggtcgtggcggtgtccctatggctcccatgcctggt
atgccccaagtccccatggcaggcggtccgggtatgcgtggcggtcagggattccctcct
caaggtgctggtcgcggcaacatgccccagggcggccgacctggtcagtctcccatgccc
ggctaccctcaaggcggacgcggcggtcctgcgggcgctggtgtcgatatgagcgctctg
agcggcgctgctcctggccagcagaagcagatgctcggcgaggctctctaccccaagatc
gctgaaatgcagcccgagctcgctggtaagatcacgggtatgcttctcgaaatggataac
agcgagttgatcaaccttacttctgacgaggcagctctgcgcgccaaggttgaggaggct
atgagcgtctatgacgaatatgtcaagaacaaagagggtgagcccgaagagaaagccccc
aaggaggagtccaaagaggaaaaagcttaa
DBGET
integrated database retrieval system
