Bipolaris sorokiniana: COCSADRAFT_31829
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Entry
COCSADRAFT_31829 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03013
Nucleocytoplasmic transport
bsc03015
mRNA surveillance pathway
bsc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSADRAFT_31829
09122 Translation
03013 Nucleocytoplasmic transport
COCSADRAFT_31829
03015 mRNA surveillance pathway
COCSADRAFT_31829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_31829
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_31829
Enzymes [BR:
bsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSADRAFT_31829
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
COCSADRAFT_31829
Spliceosome [BR:
bsc03041
]
Complex C
Other components
EJC/TREX
COCSADRAFT_31829
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
COCSADRAFT_31829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
DUF4844
Motif
Other DBs
NCBI-GeneID:
19136541
NCBI-ProteinID:
XP_007694122
JGI:
Cocsa1_31829
UniProt:
M2TK33
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIQPTEAPANGDAAAAKGGLAAGDAAGDKKGSYVGIHSTGFRDFLLK
DELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEP
GVATILVMCHTRELAYQIRNEYNRFAKFLPDVKVGVFYGGTPVQKDIELLSNKDTHPHII
VGTPGRINALVRDKHLRLANLKHFVLDECDKMLDQPDMRNDVQSIFRATPQHKQVMMFSA
TLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYVKLDEKEKNRKLNDLLDNLEFNQ
VIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGR
GIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPEDEAVLKSIEERFQV
ELPEFPEDGVNSATYMDN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaggacctcattgactactccgacgaggagattcagcccaccgaggcg
cccgctaacggcgatgcggctgcggctaagggtggtctcgccgctggtgatgctgctggc
gacaagaagggcagctatgtcggcatccattctaccggtttccgcgactttttgcttaag
gacgagctcgtacgagcaattaccgactgtggcttcgaacatccttccgaggtccagcaa
gttaccattccccaggccatcctcggaaacgatgtcctttgtcaggccaagtctggtctc
ggaaagactgccgtcttcgttctcgcaaccctccagcagatggacgagaagcccgagcct
ggtgttgccaccattctagtcatgtgccacactcgtgagctggcctaccagatccgcaac
gagtacaatcgtttcgccaagttcttgcccgacgtcaaggtcggtgtcttctatggagga
acccctgtacagaaggacattgagctccttagcaacaaggacacccacccccacatcatt
gtcggaacgcccggtcgcatcaacgcccttgttcgcgacaagcacctccgtcttgccaac
ctgaagcactttgttctcgatgagtgcgacaagatgcttgatcagcctgatatgcgcaac
gatgtccagtccattttccgtgccactccccagcacaagcaggtcatgatgttttcagcc
acgctgaacaaggacgtgcgtgttgtttgcaagaagttcatgcagaacccgcttgagatc
tacgtcgatgacgagaagaagttgacgctacacggtcttcagcaatactacgtgaagctt
gacgagaaggaaaagaaccgcaagctgaatgaccttcttgacaacctggagttcaaccag
gttattatctttgttcgttccactctgcgctgctctgagcttgacaagcttctccgcgag
tgcaacttccccagcactgctgtgcactctggaatcagccaagaagagcgtatcaagcgc
tacaaggagttcaaggagttccagacacgtatctgtgtgtcgacggatatcttcggacgt
ggtatcgatgttgagcgcatcaatgtagcgatcaactacgacatgcccgacaaggccgat
gcgtacctgcaccgtgtcggtcgtgcgggacgtttcggaaccaagggtctgagtatctca
tttgtgagcagccccgaggacgaggcagttctcaagtcgattgaggagcgattccaggtc
gagctccccgagttccccgaggatggtgtcaactctgccacttacatggacaactaa
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