Bipolaris sorokiniana: COCSADRAFT_32439
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Entry
COCSADRAFT_32439 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSADRAFT_32439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_32439
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_32439
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
COCSADRAFT_32439
Spliceosome [BR:
bsc03041
]
Complex B
Other components
Prp19-related factors
COCSADRAFT_32439
Complex C
COCSADRAFT_32439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
Mad3_BUB1_I
TPR_8
ARM_TT21
ARM_TT21_C
APOBEC_C
Motif
Other DBs
NCBI-GeneID:
19136779
NCBI-ProteinID:
XP_007694296
JGI:
Cocsa1_32439
UniProt:
M2T5Q4
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MPGELLRTVTASLSRPTKRKMEPSTDLFLITDQDVAYEQDIQRNAGSVKPWLDYYSFKKS
RGSILEQAFVLERAVTTLPRSYKLWKLYLELRTKHLANKNPAKFAPHYVKVNALFERALV
LLNKMPRIWEMYLNFLMQQPLVTTTRRTFDRALRALPLTQHNRIWALYRPFATSASGETA
VKIWRRYMQIHPEDAEDFIELLKDMRKYTEAVKKYMEILNNPRFKSKEAKGPFQFWTEMI
DLIIDHAKEIDTSDDSGIDVEKIIQSGITKFPDQRGILWVGLARYWMHKGEYEKARDVFE
EGVTTVMTVRDFSVVFDTYVEAEETMIGIKLNEAAVRSEKGKIDEAADADLDIRMVRFES
LMQRRPFLLNDVMLRQNPHNVIEWEKRVALWGDNKKEVVQTYTDAIAAINPKKAVGKFHE
LWTNYAKIYEAGGDLQNARVIMEKAVKVPFKSVSELAEMWCEWAEMELRNENFDKAVDIM
AKATQAPKRSNVDYFDESLSPQQRVHKSWKLWSFYVDLVESVSTLEETRKIYERIFELRI
ATPQTIVNYANLLEENKYFEDCFKVYERGLDLFSYPVAFEIWNLYLTKAVDRKIGMERLR
DLFEQAVEDCPPKFAKVLYLMYGALEEDRGLARHAMRIYERATRAVADEDRMEMFNFYIT
KSASNFGLTSTRPIYERAIAALPDAEAKEMCLKFAEMERRLGEIDRARAIYGHASQFCDP
RTNPEFWKKWESFEVQHGNEDTYKEMLRIKRSVQAQYNTDVNFIASQAVARGQQNGAAAN
EDGTADPADEDAMAALERQARAPAGFVAASTGPQGGNIKPAEEPTANPDAIDLDDDL
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgaactcctcaggaccgtgaccgcgagtctctcgcggcccaccaagcgcaag
atggagccctcgaccgaccttttcctcatcaccgaccaggacgtcgcgtacgaacaggac
atccagcgcaatgccggcagtgtcaagccatggctcgactactacagcttcaaaaagtca
cgtgggagcatcctggagcaggcctttgtgctcgagcgcgcagtcaccacgctcccgcgc
tcctacaagctgtggaagctgtacctcgagttgcggacaaagcaccttgccaacaagaac
ccggccaagttcgcgccccactacgtcaaggtcaacgcccttttcgagcgtgcccttgtc
ctgctgaacaagatgccgcgaatctgggaaatgtacctcaatttcctcatgcagcagccg
ctcgtgaccactacccgccgtaccttcgaccgagcattgcgcgccctccccctgacccag
cacaaccgcatctgggccttgtaccgacccttcgcgacgtctgcatccggcgagacggct
gtcaagatctggcgccggtacatgcaaatccaccccgaagatgctgaggacttcattgag
ctcctcaaggacatgcgcaagtacaccgaggctgtcaaaaagtacatggaaatcctcaac
aatcctcgcttcaaaagcaaagaagcaaaggggcctttccagttctggactgagatgatt
gatcttatcatcgaccatgctaaggaaatcgataccagcgacgacagtggcatcgacgtt
gagaaaattatccagagcggcatcaccaagtttcctgatcagcgaggtatcctgtgggtc
ggtctggcacgttattggatgcataagggcgaatacgaaaaagcgcgggacgtcttcgaa
gagggtgtcactacagtcatgactgtgcgcgatttttcagtcgtttttgacacatacgtg
gaagccgaggaaaccatgattggtatcaagctgaacgaggccgccgtccggtccgagaag
ggcaaaatcgacgaggccgccgacgccgaccttgatatcagaatggttcgcttcgaatca
ctgatgcaaagaagaccgttcctactcaacgatgtcatgttgcgacagaacccgcacaac
gtcattgagtgggagaagcgcgttgcgctatggggcgacaataagaaagaggtggtacag
acatacaccgatgccattgccgcgatcaaccccaagaaggcagttggcaagttccacgaa
ctctggaccaactacgccaagatttacgaagccggtggtgaccttcagaatgcgcgcgtc
attatggagaaggccgtcaaggtgcccttcaagtccgtttccgagctggctgagatgtgg
tgcgaatgggcagagatggagctccgcaacgaaaatttcgacaaggccgttgacatcatg
gccaaggctacgcaagcaccaaaacgatccaatgtcgactactttgacgaatcgctttct
ccacaacagcgtgtacacaagagttggaaactgtggagtttctatgttgatcttgtcgag
agtgtcagtactttggaagagacgagaaagatatatgaaaggattttcgagcttcgaatt
gctacaccgcagacaattgtcaactacgccaacttgttggaagagaacaagtactttgaa
gactgtttcaaggtatacgagcgtggattggatcttttcagctatcctgtcgctttcgag
atctggaatctttacttgaccaaagccgtcgaccgaaagattggcatggagcgactacgg
gatctgtttgaacaggctgtcgaggactgcccgccaaagttcgccaaggtactgtatctc
atgtacggtgccctcgaagaagaccgtggtctggccaggcatgccatgcgcatctatgaa
cgtgctacacgcgccgtagcagatgaagacaggatggaaatgtttaatttctacatcacc
aagtcggcatccaactttggtcttacttctacacgaccaatttacgagcgcgccattgcc
gctctgcccgacgcagaagccaaggaaatgtgtctcaagtttgctgagatggagcgacgt
ctgggagaaattgaccgagcgcgagccatctacggtcatgccagtcagttctgcgatccg
aggacaaaccccgagttctggaagaagtgggagtctttcgaagtccaacacggaaatgaa
gacacctacaaggagatgctgcgcatcaagcggagtgtccaggctcagtacaataccgat
gtcaatttcatcgcttcccaagctgttgcccgcggccagcaaaacggtgcagccgccaac
gaagacgggaccgcagaccctgccgacgaagatgcaatggctgccctcgaacgtcaagct
cgtgcacccgctggctttgtcgctgctagcacaggcccgcagggcggcaacatcaagcct
gccgaagagccaacagcgaacccagacgcgatcgatctcgacgacgatctatga
DBGET
integrated database retrieval system
