Bipolaris sorokiniana: COCSADRAFT_33008
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Entry
COCSADRAFT_33008 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCSADRAFT_33008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_33008
03036 Chromosome and associated proteins [BR:
bsc03036
]
COCSADRAFT_33008
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
COCSADRAFT_33008
Chromosome and associated proteins [BR:
bsc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
COCSADRAFT_33008
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nucleoporin_FG
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
19137000
NCBI-ProteinID:
XP_007695433
JGI:
Cocsa1_33008
UniProt:
M2RN36
LinkDB
All DBs
Position
Unknown
AA seq
2009 aa
AA seq
DB search
MSFGGGFGGFGSNNNNNNNTQSTGFGGFGSTNNNTTGFGSNTNTGSSIFGASNNATTGST
MFGSNNASSSSPFGGGGGFGANTNTNTAFGSKPFSSSTTSGGLFGGGGATGGSTFGGFGS
TNNTTTSAFGSNTANTGGSLFGQNKTTGFGTSTTGGGGLFGGGSTGGGFGSTNTTATTGG
FGSNTGGAFGGGSNPPANNGTANTPFQPFSEKDGTTGNAQYQTITFQQPYQNYSLEELRV
ADYNQGRRYGNGNGQAGAFGQSTGFGGFGSNTATTGSTGFGATNNTGGGLFGGGSNTTTT
SAFGQNTGSAFGSTNNNASGGLFGQSKPATGGLFGSTNNTSTGTTGGLFGGGSTTNTTGG
FGSGGGGFGSSTTNSGGLFGQNKPATGGGLFGGGSTTNTASTPFGGSTNTGGAFGQSNNT
GGGLFGQSNQASSTPAFGATNTATNTGGGLFGGGSTTGGAFGQNNQASTQNTTSGGLFGG
GGFGQNNQQNQQKPGGLFGGASTGTTGGGLFGGQTNQNQPASGGLFGGSTANNNSTGGGL
FGQKPATGGTSLFGGGNTSNTGTSGGGLFGNIGTQSNQQNSAGGGLFGGQNNNQQKPGGL
FGGSTTNTNTGGGLFGGGLGQQNNNQQSTLGGSLFSSQNQQPQQQQNGNSLFGASGSSLL
NTSMNTNPYGNDALFAGLGTPTQSPGPLATPLSSSQKNKKNAILPQHKLNPAASTRLLTP
QAKRGGYGFSYSTYGGSAASSQAGTPNLGGSLFANGGLSRSLGKSISSSNLRNNFAADTS
ILAPGAFSTTGRNFGNSGLKRLNINRNINAARTPLFDEPSQKRVSFAAGETVNGNTNGET
ALIVRQDEEEGSPKAGSHDESSDNSPSEMQKVNGTELACVYEDNALAPKSMSSVNIQPGQ
DPKPGEYWSSPPMEKLRKMSKQELKSVPNFIVGRQHIGEIKFNHGKPVDLSEVNLDKLFG
DIVQLNPRNATVYGETCTCLPKPPLGSALNQPSLIVLGNSWPRNRAGKKDVKHLERLKRV
AGTTFVNYNQATGEWTFTVPHFSSYGLDYDDYSEDEDEDGSSEFSDVPDTPLDQQHRSSQ
MTSTPQDDSFASPTQSSPDDTFDFKKGMRGGRTNVPGGFGDDTLYDDEEEMQDTHGESFL
GQRSVGSLDRQHDADYYEESESELARDQNMADSASSPIQTTEQLAAKDEISRGSLMPKSI
LKAGQFLKPATGTPSKAQPVFDDDWANQLQRTISPKKQDRQALRESQGHVLREQELQPTN
FSQSFRGRPMTTAMDLMDSLFGETEKQQFSKRGGHGIELPYSKRPKTSSDLDQLNETEKD
FYACSKPHFSEGNILIYGNKGPAHLEGGIFPTAQEPLIGATKDIRFAKMPTFNDAVPETL
TVQKQHTKIYTPTGIPSAKLMTDPAPVEFSSMAKAVALDTTAGVQEQQTWQLLSLLFDDA
DRVPAGIQVEEMKLYRKERLSEFWRLLVWDDAQKHVQAATSPEERALAHLSCNSVADACH
TLLDGLDLRLATMIAQIGGDETMRQSMSAQIDEWRRLDTLSEMEDAHRALYELLAGNCTQ
SEGKTGAGSENRASTFNISNRFGLDWRRAFGLRLWYGTLANEPIEMAIAQFADAVRDGRE
VVKPVPWFVKDKVDMGWKDPAPEHREDLLWGILKLYASAKMDLPANIENILAPENVSGNP
FNARLSFQLFQLFKSRQEDVSEADERKVVMPTVRSEDDSDDRFRRSLQSWTAPGAADDVQ
AADSLVELNDKITLTYASSLHTPELWTTAIWVYTHLSFAPMREHYIRSLVTQFSGLFSLE
DSNPTYAHLTADLHVPSTWLHAAAALHAKSSGDALREATHLIKADEFEEAHEVLCRKVGP
EAIISRDYDALRELMAGFVAESNVPLPREPVQGWAQGGQIYFDYIELIDLTGARSSYRVD
EELENRVEELLVKLQRALEIAGRDRLGACGLEERVALMDIAGTVANLITKNQRTNRNSIL
KLPLTEDLWLKHSIDLSTSYYRNLLVTSR
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcggcggcggtttcgggggctttggctccaataacaacaacaacaacaacacc
cagtccactggtttcggcggatttggatcaactaataacaacacgactggcttcggctcc
aacacgaacactggctcaagcatattcggcgcaagcaataatgccactacgggcagcaca
atgtttggatccaacaatgccagctcgagctctccttttggaggcggaggtggctttggc
gccaataccaacaccaacacggcctttggctcaaagcctttcagcagctcaacgacaagc
ggtggtctctttggaggtggtggcgctactggcggcagcacgtttggagggtttggatca
accaacaacaccactacctcagctttcggcagcaataccgcaaacactggaggcagcctc
ttcggtcagaacaagacgactggctttggcacttcaacgactggaggtggtggattattt
gggggtggcagtactggcggcggatttggctcaaccaacaccaccgctactacgggcggc
ttcggttccaacactggcggcgcttttggcggaggcagcaatcctcctgcgaacaacggt
accgccaacactcctttccaacctttctccgaaaaagatggaaccaccggcaacgcgcaa
taccagaccatcacctttcagcagccataccagaactactccctggaagaactgcgtgta
gccgactacaaccaaggccgacggtatggcaatggcaatggtcaggctggagcgttcggg
cagagtactggattcggaggctttggtagcaacaccgccaccactggctccacaggcttt
ggcgcaaccaacaacaccggtggcggcttgtttggcggtggcagcaacactactacgacg
tctgcatttggtcaaaacacaggttcagcctttggctcaactaacaacaacgctagtgga
ggtctattcggacagagcaagcctgctactggaggactcttcggttccacaaacaacacc
tcgaccggaacaaccggtggtctcttcggtggcggatctactaccaacactacaggaggc
tttggatcaggaggcggtggcttcgggtcgtcgactactaacagtggtggcctgtttggt
caaaacaagcctgcgactggcggtggtctttttggtggcggcagcactactaacaccgcc
tcgaccccattcggtggctcaacgaacactggtggcgctttcggtcaatccaacaacacc
ggtggtggtctgttcggccaatccaaccaggcctcttctacaccagcctttggcgctacc
aacactgctaccaacactggcggtggcctgtttggcggtggtagcactactggtggagcg
ttcggacagaacaaccaagcttcgacgcaaaacaccacttctggcggtctctttggtggt
ggtggattcggtcagaacaaccaacagaaccagcaaaagccgggtggtctgtttggcggc
gcaagcactggcactacaggaggcggtcttttcggtggccaaacgaaccagaaccagcct
gctagtggcggactgtttggaggttctactgcgaacaataacagcactggaggcggtctc
tttggccagaagcctgctactggcggtacttccctgtttggaggtggcaacacttctaat
acaggaacgtctgggggaggtctgttcggaaacatcggtacacagagcaaccagcaaaac
agcgctggaggcggactttttggtggtcagaacaacaatcagcagaagcctggcggtctg
tttggcggttccacaaccaacacaaacactggcggcggtttgtttggcggcggtctcggc
cagcaaaacaacaaccagcagtcaaccctgggaggctctcttttctccagtcagaaccag
cagccacaacaacagcagaacggcaacagcttgttcggcgcctcaggaagttctctgctg
aacacttccatgaacaccaacccctatggcaacgacgccttgtttgctggactgggaact
cctactcaaagcccaggcccacttgctaccccgctttccagcagccaaaagaacaagaag
aatgctatactgcctcagcacaagctcaatccggctgcatcaactcgcctcctgaccccg
caggctaagagaggcggttatggattcagctactcgacctacggcggctcagctgcctcc
agccaggctggcactcctaacttgggtggaagcctctttgccaacggtggtctttcccgg
tcacttggaaaaagcatatcttctagcaatctccgcaataacttcgctgctgacactagc
attctggctccgggtgcattctcgaccaccggacgcaactttggcaatagtggtctgaag
cgacttaacattaaccgcaacatcaatgctgctcgtactccactatttgatgagccatcg
cagaagcgtgtcagttttgctgcgggtgagactgtcaacggcaacacgaacggcgagact
gcattgattgtcaggcaggatgaggaggagggctcacccaaggcaggaagccatgatgaa
agcagcgacaactctccctcagaaatgcaaaaggtcaacggcacggaactcgcatgtgtc
tacgaagacaatgcgcttgcccccaagtcgatgtcatcggtcaacatccagcctggacaa
gaccctaagccgggcgagtactggtccagcccacccatggagaaactgaggaagatgagc
aagcaggagctgaagagcgtccccaacttcattgtgggccgtcagcacattggtgagatc
aagttcaaccatggcaagcctgtcgatctatctgaagtcaacctcgacaagctattcggc
gacattgttcagctcaacccacgaaatgccactgtctacggcgagacctgcacctgtctg
cccaagcctccgcttggttctgctctgaaccagccctctctgattgttcttggcaattcc
tggccgcgcaacagggctggcaagaaagatgtcaagcacctggagcgactaaagcgagtt
gctggaactacttttgtcaactacaaccaagctactggtgaatggaccttcaccgtccca
catttctcgtcgtacggtctggattatgatgactacagcgaggatgaggatgaggatggt
tccagtgagtttagcgatgtcccagatacacccctagatcagcagcatcgctcaagccaa
atgaccagcacgccacaggacgattcatttgccagtcccacccagtctagccctgacgac
acctttgatttcaagaaaggcatgcgtggagggcgtactaacgtgccaggtggctttgga
gatgacactctgtatgatgatgaggaagagatgcaagacacccacggcgagtctttttta
gggcagcgctccgtgggttcgcttgatagacagcatgacgctgactattatgaagaaagc
gaatcggaattggcgcgtgaccagaacatggcggattctgcgtcgagcccaattcaaacc
acggagcaactcgccgccaaggatgagatttccagaggctcgttgatgccaaaatctatt
ctcaaggctggtcaatttctcaagccggcaacaggtacaccttccaaagcacagccagtg
ttcgatgacgattgggcaaatcagctacaacgtacgattagtcccaagaagcaagatcga
caggcccttcgtgaaagtcagggccatgttctgcgagaacaagaactccaacccacgaac
ttctcgcagtcttttcgtggccgtcctatgactacagccatggatctcatggactcgctt
tttggtgagacggaaaagcaacaattttccaagcgtggtggacatggtattgagttacct
tattccaagcgcccaaagacctcatccgacctcgaccagctaaatgagaccgaaaaagac
ttttatgcctgcagcaaaccacacttcagcgaaggaaacatcctgatctacggcaacaag
ggtcccgcgcatctcgaaggcggtatctttcccactgctcaagaaccacttattggtgct
accaaggacatccgatttgcaaaaatgcccacgttcaacgatgctgtacccgaaactctc
actgtccagaaacaacacacaaagatttacactccaaccggcattccctctgcaaagctc
atgaccgatcctgctccagtggaattttccagcatggcgaaagctgttgcacttgatacc
actgcaggtgttcaagagcagcagacttggcagctgctttcgcttttgtttgatgatgct
gacagggtccctgcgggtatccaagtggaggaaatgaagttgtatcgaaaggagaggctt
tcggagttctggaggcttctggtatgggacgatgcacagaaacatgtccaagcggctaca
tcccccgaggagcgtgctcttgcgcatctaagctgcaacagtgttgctgacgcttgccat
actctgctcgacggcctggacctccgacttgctacgatgattgctcagattggaggtgat
gagacgatgaggcagagcatgtctgctcaaattgatgagtggcgtcgccttgatacactt
tctgaaatggaagatgctcaccgggcattgtacgagcttcttgctggcaactgcacgcaa
tcagagggcaagactggagcaggcagtgaaaatcgggcttctacctttaacatctcaaat
cgtttcggtctcgactggcggcgcgcttttggactgcgcttgtggtacggcacgcttgcc
aatgaacctatcgaaatggccatcgcccaatttgcggatgcagtcagggatggcagggaa
gttgtcaagcctgtcccttggttcgtcaaggataaggttgacatgggctggaaagatcct
gctccagagcatcgagaagacctcctttggggtatcttgaagctctatgcctctgcgaag
atggacctccctgcgaacattgagaatattctagctcctgagaacgtctctggcaacccc
ttcaacgctcgactctcattccaactgttccagctcttcaagtcgcgacaagaagacgtc
agcgaggcagatgaacgcaaggtggtcatgcccacagtccgctccgaagatgacagcgat
gaccgattccgccgctcattgcagtcatggactgcaccaggtgctgcggacgacgtccaa
gcagcggattcgcttgtggagctgaacgataagatcacgctcacttatgcatcctcgcta
cacacaccagagctttggacgactgcaatctgggtctatactcatctgtcttttgcgccg
atgcgtgagcactacatccgctctctagtcacccagttttctggtctgttctccttggaa
gacagcaacccgacctatgcacacctcacagcagatctccatgtcccttcaacatggctc
catgcagccgccgctctgcacgccaagtcgagtggcgatgctcttcgtgaagcaactcat
ctcatcaaggccgatgagtttgaagaggcacacgaggtgctgtgcaggaaggtcggtcca
gaagccatcatctcccgcgattacgacgccctgcgtgagctcatggccggcttcgtcgca
gagtcaaacgtacctcttccacgggagccagtccaaggctgggcccaaggcggacaaatt
tacttcgactacatcgagctaatcgacctgaccggtgcacgctcatcataccgtgtcgac
gaggaactcgagaaccgcgtcgaagaactcctcgtcaagctccagcgcgccctcgaaatc
gccggccgtgacagactcggtgcatgtggacttgaagaacgtgtcgctctcatggacatt
gctggtaccgtcgcaaacctcatcaccaagaaccagcgcacaaaccgcaattccattctc
aaacttccgcttacagaagatctctggctcaaacactcgatcgatcttagcacaagctac
taccgcaacttactagttacgagcagatag
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integrated database retrieval system
