Bipolaris sorokiniana: COCSADRAFT_33097
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Entry
COCSADRAFT_33097 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_33097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bsc03000
]
COCSADRAFT_33097
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_33097
04121 Ubiquitin system [BR:
bsc04121
]
COCSADRAFT_33097
Enzymes [BR:
bsc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
COCSADRAFT_33097
Transcription factors [BR:
bsc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
COCSADRAFT_33097
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCSADRAFT_33097
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCSADRAFT_33097
Ubiquitin system [BR:
bsc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
COCSADRAFT_33097
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Rtf2
SET_assoc
Baculo_IE-1
zf-C3H1
Prok-RING_4
FYVE
Motif
Other DBs
NCBI-GeneID:
19137037
NCBI-ProteinID:
XP_007695451
JGI:
Cocsa1_33097
UniProt:
M2SLT9
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MSRVQQDQFVDDDEEECCPLCVEEFDLSDRNFRPCPCGYQICQFCYNNIKTTMNGLCPAC
RRPYDDSTIEWKTISPEEMAQHKQQIAQKAKKNAQMRQKEAQKAEADSLSRKHLSGLRVV
QKNLVYVTGLTPTIREDELLKTLRGEDYFGQYGKILKIVVSKAKENAQHQQSVGVYVTFA
RKEDAERCINAVDGSQNGDRVLRAQFGTTKYCSAYLRGETCNNRNCMFLHEPGEDNDSFT
RQDLSMMNSIQTQQPSQSSTSRAAPPAHHGPPVAAATPMHRQDSTDTSSSIHDAPGLPAT
ANWGSKALLERRASRSTTASNNASPMVTNAVLAQAAKAPKPVEAPKKKGKEKEKEKEKEK
EKEKEKEKDKEKEKEKDKDKDKDKEKEKEKEKEKYPQASTSTTSESTTASAPTTTTRPSK
PRNQDFPDLLKIICSPDFKFVFSSAVLSEEELKAVTEFPQLLDPNGGAKRRAMKEKEKEL
AALREAEGEVKVASQQQAPAAEREDNEATAGGSLQLGGEPEDGPDTSTNHLGQHVIAPPG
QQGFGGSLFGQNTPLTDDFSTLGLSNRGLTPQQQQQLLLSNFKSGTQSTGLLGNMQNTQP
QQHGMAGNASGHNRHTSRFSFANDSASASANVQPVANQKLMNQQNSMMPKNASQFNPMSQ
HQPLGGQFFTNVQGPPPGLKPTGTPPVSGTGMFGQGHGFATGGLPYGTGATARNNSDAMY
QDLLRSRNMDGNARLADAGKRESMFPSFLNQHSTTSTPAPAPGLLSFPYGPSPGAYQESG
SQKSKKKGKKHRHANTSSSGGGGLADVQDPSILQARLHQGGMAGQGLYGQGQSGFSSLYS
NNNYGGAGRW
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgggtacagcaggaccagttcgtcgatgatgacgaggaagagtgctgccctctg
tgcgtcgaggagttcgatctgtccgacaggaacttccgaccatgtccttgtggctaccaa
atatgccagttctgctataataacatcaagacaaccatgaacggcctttgccccgcctgc
cgccgcccctacgatgactccacaatcgagtggaagaccatctctcccgaagagatggca
cagcacaagcagcaaattgcgcaaaaggccaagaagaatgcgcagatgcggcaaaaggaa
gcacaaaaggccgaagccgactcgcttagccggaagcacctttctggccttcgagtcgtc
cagaagaaccttgtatatgtcacgggtcttacgccaacaatacgtgaagatgaactgctc
aagacgctacgtggcgaggactattttggccaatatggcaagatcttgaagattgtcgtg
agcaaagccaaggagaatgcacagcatcagcagtcggttggtgtctatgtgacgtttgct
cgcaaggaagatgccgagagatgcatcaacgccgttgacggttcgcaaaacggcgacaga
gtgctcagagcacaatttggtactaccaaatactgttcagcctatctccgcggtgagact
tgcaacaatcgcaactgcatgttcctacacgagcccggcgaagacaatgacagcttcacc
cgccaagacctttccatgatgaactcgatccaaacgcaacagccatcccaatcgtcaacg
tcacgagccgcgcctcctgcgcatcatgggcctcccgtagccgctgcaacgccaatgcat
cgacaagatagcactgatacgtcgagttcaatacatgacgcacctggtctgcccgccact
gcgaactggggtagcaaagctctactggagcgtcgtgcaagtcgttcaacgaccgcctcc
aacaacgctagccctatggtcacgaatgcggtactcgcacaagcagcaaaagcacctaag
ccagtagaagctccgaagaagaaaggaaaagagaaggagaaagagaaagagaaagagaaa
gagaaagagaaagagaaggaaaaggacaaagaaaaagagaaagagaaggacaaggacaag
gacaaggacaaagagaaggagaaggaaaaggagaaggaaaagtatccgcaagcatcaacg
tcgacaacctccgagtctaccaccgcatccgcacccacgaccaccacacgcccctccaaa
ccccgcaatcaggatttcccagacttgctcaagatcatatgctcgcccgacttcaagttt
gtgttctctagtgcagttctttcggaggaagagttgaaggctgtgaccgaatttcctcag
ttgcttgatccaaatgggggcgcaaagcgacgcgcaatgaaagaaaaggaaaaagaactt
gctgcattgcgggaggcggaaggtgaagtgaaagtggcttcccagcagcaagcgccagcc
gctgaacgcgaggacaatgaggctactgcggggggtagcttacagttgggcggggaaccc
gaagatggacctgacacaagcaccaaccatctcggtcagcatgtaatcgcaccacccggt
caacagggttttggcgggagcctctttgggcagaacacgcctttgaccgacgactttagc
acccttgggttgagcaacagaggcttgacgccacaacagcagcagcagttactgctctcc
aacttcaagtctggcactcaatccactggcctgctaggcaatatgcaaaacacgcagccc
cagcagcatggaatggctggaaatgcttctggacacaacaggcacacttcccgcttcagc
ttcgccaacgacagcgcttcagcttcagcgaatgtacagcctgtggcgaaccagaaactg
atgaatcagcaaaattcaatgatgccaaagaacgccagtcagttcaatccaatgtcccag
catcagccactgggcggacaattcttcaccaacgtgcaaggaccgcctccaggactgaag
ccgactggcacgcctcctgttagcgggactggtatgttcggtcaaggtcacggctttgct
actggcggccttccctatgggacgggtgccactgcaaggaataacagtgacgcgatgtat
caggatctgctccgcagccgcaacatggatggtaatgctaggctagctgatgctggaaag
cgtgagtcaatgtttccttctttccttaatcaacactccacgacctctacacctgcccca
gcccctggtcttctgagcttcccttatgggccttcgcctggcgcttaccaggaatctggt
tcgcagaaatctaagaaaaagggcaagaagcacaggcatgcaaacacctcttcttctgga
ggaggtggccttgctgatgtccaagacccgagtatcttgcaggcaaggctgcatcaaggt
ggcatggctggtcagggcctgtatggccaaggtcaaagcggattttcttcgctttattca
aacaacaactacggcggcgctggacgatggtag
DBGET
integrated database retrieval system
