KEGG   Bipolaris sorokiniana: COCSADRAFT_38126
Entry
COCSADRAFT_38126  CDS       T03124                                 
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
bsc  Bipolaris sorokiniana
Pathway
bsc03020  RNA polymerase
bsc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bsc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    COCSADRAFT_38126
  09124 Replication and repair
   03420 Nucleotide excision repair
    COCSADRAFT_38126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsc03021]
    COCSADRAFT_38126
   03019 Messenger RNA biogenesis [BR:bsc03019]
    COCSADRAFT_38126
   03400 DNA repair and recombination proteins [BR:bsc03400]
    COCSADRAFT_38126
Transcription machinery [BR:bsc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     COCSADRAFT_38126
Messenger RNA biogenesis [BR:bsc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     COCSADRAFT_38126
DNA repair and recombination proteins [BR:bsc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      COCSADRAFT_38126
SSDB
Motif
Pfam: SHS2_Rpb7-N S1 RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 19139174
NCBI-ProteinID: XP_007701080
JGI: Cocsa1_38126
UniProt: M2T232
LinkDB
Position
Unknown
AA seq 171 aa
MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTIVCILDSFDISDGKVMP
GSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQAFVGRSMIPAEIKFDA
NATPPQWTDDGEQVIEKGTNIRIKIKGLRSEVDKMYAVGTMKEDYLGPLPS
NT seq 516 nt   +upstreamnt  +downstreamnt
atgttttttctcaaagaactcgagaagacgatccagctgcatccgtcgtactttggtcct
ctgattcgccagcacatccatcgcgaactgttgcagaaagaggaggggtcgagtactgga
aaatacaccatagtgtgcatcttggactcgttcgacatatccgatggcaaagtcatgcct
ggctctggctccgctgaatacgttgtacattacaaggcagttgtgtggaggccgtacaaa
ggcgaggtgatggatggcattgtcacctcagtgctccgcacaggtttctttgtagactgt
gggtctttgcaagcattcgtaggacgaagtatgatccctgccgagatcaagttcgacgcg
aacgccacaccgccgcaatggaccgacgacggagaacaggttattgaaaagggcactaac
attcgtatcaagatcaagggtctgagatctgaagttgacaagatgtatgccgtgggcaca
atgaaggaggattaccttggcccgctgccgtcttag

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