Bipolaris sorokiniana: COCSADRAFT_38126
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Entry
COCSADRAFT_38126 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03020
RNA polymerase
bsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COCSADRAFT_38126
09124 Replication and repair
03420 Nucleotide excision repair
COCSADRAFT_38126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsc03021
]
COCSADRAFT_38126
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_38126
03400 DNA repair and recombination proteins [BR:
bsc03400
]
COCSADRAFT_38126
Transcription machinery [BR:
bsc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
COCSADRAFT_38126
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCSADRAFT_38126
DNA repair and recombination proteins [BR:
bsc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
COCSADRAFT_38126
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
RNA_pol_Rbc25
Motif
Other DBs
NCBI-GeneID:
19139174
NCBI-ProteinID:
XP_007701080
JGI:
Cocsa1_38126
UniProt:
M2T232
LinkDB
All DBs
Position
Unknown
AA seq
171 aa
AA seq
DB search
MFFLKELEKTIQLHPSYFGPLIRQHIHRELLQKEEGSSTGKYTIVCILDSFDISDGKVMP
GSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLRTGFFVDCGSLQAFVGRSMIPAEIKFDA
NATPPQWTDDGEQVIEKGTNIRIKIKGLRSEVDKMYAVGTMKEDYLGPLPS
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgttttttctcaaagaactcgagaagacgatccagctgcatccgtcgtactttggtcct
ctgattcgccagcacatccatcgcgaactgttgcagaaagaggaggggtcgagtactgga
aaatacaccatagtgtgcatcttggactcgttcgacatatccgatggcaaagtcatgcct
ggctctggctccgctgaatacgttgtacattacaaggcagttgtgtggaggccgtacaaa
ggcgaggtgatggatggcattgtcacctcagtgctccgcacaggtttctttgtagactgt
gggtctttgcaagcattcgtaggacgaagtatgatccctgccgagatcaagttcgacgcg
aacgccacaccgccgcaatggaccgacgacggagaacaggttattgaaaagggcactaac
attcgtatcaagatcaagggtctgagatctgaagttgacaagatgtatgccgtgggcaca
atgaaggaggattaccttggcccgctgccgtcttag
DBGET
integrated database retrieval system