Bipolaris sorokiniana: COCSADRAFT_39456
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Entry
COCSADRAFT_39456 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_39456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_39456
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
COCSADRAFT_39456
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_S1
Rrp44_CSD1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
Dis3l2_C_term
DUF7923
DIP2116-like_N
SIN1
Motif
Other DBs
NCBI-GeneID:
19139500
NCBI-ProteinID:
XP_007702652
JGI:
Cocsa1_39456
UniProt:
M2SY71
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MEYFSLKRSTAADRGQSNLSSKVYVRSTKSGKVQKIVRELYLRQDIPCSSTLCRACLEIA
PADYSKKTSPFVLSDTPAGSKHFPNGQYLVPDTNAFLTGMDLFEVETAFHDVIVLQTVLE
EVKNRSLPLYHRLISLTKNEGKRFYVFFNEFRQETNVVREPGETINDRNDRAVRKAVQWY
NQHITDAVKARSKSQTRIPTVVMITDDRDNLRKAKSEDVPGLTLSDFVSGLENSDELLDM
ISAAQEQREVRSKKAEVFYSEHYSVSKMMTGVKAGTLHQGIFNVSPYNYLEGSVHVPAFD
KSLLILGRENSNRAVSGDVVVVEVLPQDQWKAPSTKIIEEETVNKNDNAEAEEGENVIPE
RERRALQEEVKRVHGQSAEGRPQPTARVVGIIKRNWRQYVGHIDRDSVRSSSKSSRQQQT
VFLVPMDKRIPKIRIRTRQAGELLGQRVLATIDSWEKDSRYPVGHFVRSLGELESKGAET
EALLLEWDVQYKPFPKTVLDCLPAEGHDWKVPANMDDPGWRGRKDLRDLLVCSIDPVGCV
DIDDALHAHKLPNGNYQVGVHIADVSHFVKPNNAMDKEASQRGTTVYLVDKRIDMLPMLL
GTDLCSLKPYVERYAFSVIWEMTEDADIVASHFTKSVIRSREAFSYEQAQIRIDDQSQTD
DLTKGMRTLLMLSKKLKQKRMDAGALNLSSPEVKVRTESETSDPADVQTKKHLDTNSLVE
EFMLLANTSVAAKNYEAFPQTALLRRHAAPPKTNFEELDNQLKVKKGMEIKTDSSKALAD
SLDKCVDPNNPFFNTLVRIMATRCMMSAEYFCAGTQAYPEFRHYGLASEIYTHFTSPIRR
YADLEAHRQLAAAIEYEQLDASLQSKAKLEAVCKNINVRHRNAQMAGRASIEYYVGQALK
GKDINEEGFIMKIFSNGFVVFVPRFGIESLIRLRDLATPEPEADFDAENYVLSIKGDVKR
SVELFEKVTVRIMDELEESTGKRKVKLSLV
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggagtactttagtctcaagcgctccacggctgccgatcgtggccaatcaaatctctcc
agcaaggtctacgtgcgatcaacaaaaagcggcaaagtccaaaaaatcgtcagagagctc
tatctacgacaggacattccctgttcatcgaccctctgcagagcatgtctcgaaattgcg
cccgctgactactccaagaagacatctcctttcgtcctgtccgacacgccggcaggatca
aagcattttcccaatggccagtatctagttccagacacaaacgccttcctcacgggtatg
gacctgtttgaagtcgaaaccgccttccatgatgtcattgtgctccaaaccgtgctcgag
gaggttaagaaccgctcgctaccgctttaccaccgcttgatatctctaaccaagaatgag
ggcaagcgcttctacgtcttcttcaacgagttcagacaagagacgaatgtagtccgggag
cccggcgagacgatcaatgaccgcaatgaccgggcagtgcgcaaagccgtccaatggtac
aaccagcacatcaccgacgctgtcaaagcacgaagcaagtcgcagactcgcatccccact
gtcgtcatgattactgatgatagggataatctgcgcaaagccaagagcgaggatgtgcct
ggcctgacattatccgactttgtttccggcctggaaaactctgatgaacttctcgacatg
attagtgctgcacaagaacagcgcgaagtcagatcaaaaaaggcagaggtcttctactcg
gagcactactccgtctcaaaaatgatgacgggcgtaaaagccggtactttacaccaaggc
atcttcaacgtttcaccatacaactacctcgaaggatctgtacatgtccccgctttcgac
aagtcactcttaatcctaggacgcgagaacagcaatcgtgcggtttctggtgatgttgtc
gttgtcgaagtcctgcctcaagatcaatggaaagcaccatctacaaaaatcatcgaagaa
gagacagtgaacaagaacgataacgctgaggcagaagagggagagaacgttattcctgag
agggagcgacgagcattacaagaggaggtaaaacgagtccacggtcagagcgcagaagga
cggccgcagccgacagcacgggttgtgggtattatcaagcgtaactggcgacaatacgtg
ggccatatcgaccgcgactcggtccgctcttcatcgaaatcaagtagacaacaacaaact
gtcttcctcgtccccatggacaagcgcatacccaagatccgtatccgaacacggcaggct
ggagagcttcttggtcagcgtgttctggcaaccatcgactcctgggaaaaagattcacgg
tatccggttggccattttgttcgatcacttggtgaacttgaatcaaagggcgcagaaacc
gaagctttactgcttgagtgggacgtacaatacaagccattccccaagacggtcttggat
tgtttgcctgccgaaggccacgactggaaagtacccgccaacatggacgatccgggttgg
agagggcgcaaggatcttcgcgatcttttagtctgctctattgatcctgtcggttgtgtt
gatattgacgatgctctccacgctcacaaacttccaaacggtaactaccaggtcggcgtt
catatcgccgatgtatcacactttgtcaaaccgaataatgcaatggacaaagaagccagt
cagcgtggaacaacagtatatctagtcgacaagcgcatagacatgcttcccatgcttctt
ggaacagatctgtgctcgttgaagccatacgttgagcgatacgccttctctgtgatttgg
gaaatgacagaggacgcggatattgttgcttctcatttcacaaagtccgtcatccgctca
agggaggcttttagctacgaacaagcccagatccggatagacgaccaatcacaaactgat
gacctgacaaagggcatgcgaacattgctcatgctctccaagaagttgaagcaaaagcga
atggatgcaggagctctaaatctttcctcgccagaggtcaaggtccgaacggaatccgag
acatcagacccagcagatgtgcagaccaagaagcatctcgacaccaattcgctcgtagaa
gagttcatgttgctcgccaacaccagtgtcgccgcgaagaattacgaagcctttccacaa
acagctctgttgcgccgtcacgcggccccacctaagacgaactttgaggagcttgacaac
cagctgaaggtgaagaagggaatggagatcaagacggacagttccaaggctctggctgac
tcgctcgacaagtgtgttgatcctaacaaccccttcttcaacactctagtcagaatcatg
gctacacgctgcatgatgtccgcggagtacttttgcgcaggcacacaagcatatccagag
ttccgacattatggtctggccagcgagatttacacgcactttacatctcctattcgtcgt
tatgctgatcttgaagcacaccgtcagcttgctgctgcaatcgagtatgagcaactagac
gccagtctgcaatcaaaagccaaactcgaggccgtatgcaaaaacatcaacgtccgtcac
cgcaatgcccaaatggctggacgagcctcgatcgagtattacgtcggccaagcgctcaag
ggtaaggacattaacgaagaaggattcatcatgaagattttttccaatggtttcgtggtg
tttgtgccacgctttggcattgagagccttatccgcttgagagatcttgcgactccagag
ccagaggccgacttcgatgctgaaaactatgtactcagtatcaagggcgatgtcaagagg
agcgttgagttgtttgagaaggtcactgtcaggattatggatgagcttgaagagagcact
ggcaagaggaaggtcaagttgagtctggtctga
DBGET
integrated database retrieval system
