KEGG   Bipolaris sorokiniana: COCSADRAFT_41270
Entry
COCSADRAFT_41270  CDS       T03124                                 
Name
(RefSeq) hypothetical protein
  KO
K15171  transcription elongation factor SPT4
Organism
bsc  Bipolaris sorokiniana
Pathway
bsc03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:bsc00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    COCSADRAFT_41270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsc03021]
    COCSADRAFT_41270
   03019 Messenger RNA biogenesis [BR:bsc03019]
    COCSADRAFT_41270
Transcription machinery [BR:bsc03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     COCSADRAFT_41270
  RNA polymerase I system
     COCSADRAFT_41270
Messenger RNA biogenesis [BR:bsc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     COCSADRAFT_41270
SSDB
Motif
Pfam: Spt4 Acc5b_avian_CoV Ig_TMEM132_5th
Other DBs
NCBI-GeneID: 19139950
NCBI-ProteinID: XP_007704892
JGI: Cocsa1_41270
UniProt: M2RWG6
LinkDB
Position
Unknown
AA seq 124 aa
MAGGAYIPPNQQRNMRACMVCSIVRTQQQFLSQGCPNCEEFLELTGNPEQINDCTSQVFE
GLITVADTTKSWVARYQRLEGYQPGVYATQVEGILPDDIIGLIESAGINYVPRDGSEQDM
LPKD
NT seq 375 nt   +upstreamnt  +downstreamnt
atggctggcggcgcgtacatcccccccaaccagcagcgcaacatgcgcgcctgcatggtc
tgctccattgtccgcacccagcaacagttcctgtctcagggctgccccaactgcgaagag
tttcttgagctcaccggcaacccggagcagatcaacgactgtacctcgcaagtctttgaa
ggcctcatcactgtcgcagacaccaccaagagctgggtggccaggtaccagcgcctcgag
ggctaccagccgggtgtgtacgcgacccaggtcgagggtatccttcctgatgacattatt
ggcttgatcgagagcgccggcatcaactacgtaccgagagatggcagcgaacaggacatg
ctgcccaaggattaa

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