Bipolaris sorokiniana: COCSADRAFT_81543
Help
Entry
COCSADRAFT_81543 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03013
Nucleocytoplasmic transport
bsc03015
mRNA surveillance pathway
bsc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSADRAFT_81543
09122 Translation
03013 Nucleocytoplasmic transport
COCSADRAFT_81543
03015 mRNA surveillance pathway
COCSADRAFT_81543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_81543
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_81543
03009 Ribosome biogenesis [BR:
bsc03009
]
COCSADRAFT_81543
03012 Translation factors [BR:
bsc03012
]
COCSADRAFT_81543
Enzymes [BR:
bsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSADRAFT_81543
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
COCSADRAFT_81543
mRNA cycle factors
Stress granule specific factors
COCSADRAFT_81543
Spliceosome [BR:
bsc03041
]
Complex C
Other components
EJC/TREX
COCSADRAFT_81543
Ribosome biogenesis [BR:
bsc03009
]
Eukaryotic type
90S particles
Helicases
COCSADRAFT_81543
Translation factors [BR:
bsc03012
]
Eukaryotic type
Initiation factors
eIF-4
COCSADRAFT_81543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
AAA_22
UvrD-helicase
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
19140836
NCBI-ProteinID:
XP_007697067
JGI:
Cocsa1_81543
UniProt:
M2SYJ6
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MADGIDRNADDKMEFSTSKEVTVAPTFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVC
KGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQQVIMGLGDYM
NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELL
NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQ
YFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQ
RERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGR
KGVAINFVTQDDVRILRDIELYYSTQIDEMPMNVADLLS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggaatcgaccgaaatgccgacgacaagatggagttctccacctccaaggag
gtcacggttgcgccgaccttcgaggccatgcacctgaaagagaacctgctgcgcggcatc
tacgcctacggatacgagtcgccttcagctgtgcagtcgcgtgctattgtgcaggtctgc
aaggggcgcgacaccatcgcccaagctcagtcgggaacgggaaagacagcaaccttttcc
atttccatcctccaggttatcgacacggctgtccgagagacgcaagcactcgtactgtca
cccacgcgcgagttggcgacccagattcaacaggtcatcatgggtcttggtgactacatg
aacgtgcaatgccacgcctgtatcggaggcaccaacgttggcgaggatattcgcaagctc
gactacggtcagcacgtagtctctggaacacctggacgcgtcgccgatatgattcgccgc
cgcaatctccgcacgcgcaacatcaagatgcttgttctcgatgaagccgacgagcttctc
aaccgcggtttccgtgagcaaatctacgacgtctaccgctacctcccacctgcgactcag
gttgtggttgtttccgccacccttccatacgatgtgcttgagatgacgaccaagttcatg
accgaccccgtgcgcattctagtcaagcgtgacgaattgacgctagaaggccttaaacaa
tatttcatcgccatcgaaaaggaagagtggaagttcgatactctctgcgatctttacgac
acactcaccatcacacaagcggtcatcttctgcaacacacgccgcaaggtcgactggctc
accgacaagatgcgcgaggccaattttactgtttcctcgatgcacggagatatgccacaa
agggaacgagacagcattatgcaagacttccgtcaggccaactcccgcgtgctcatttcc
actgatgtctgggctcgtggtatcgatgtgcaacaggtgtcgctcgtgatcaactacgac
cttccgtcaaaccgtgaaaactacattcacaggattggtcgaagcggccgattcggacgt
aagggtgtggccatcaacttcgttactcaggatgatgtccgcatcctccgtgacattgag
ttgtactactcaactcaaattgatgagatgcccatgaatgttgccgaccttctctcgtag
DBGET
integrated database retrieval system
