Bipolaris sorokiniana: COCSADRAFT_90927
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Entry
COCSADRAFT_90927 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
bsc
Bipolaris sorokiniana
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsc03016
]
COCSADRAFT_90927
Enzymes [BR:
bsc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
COCSADRAFT_90927
Transfer RNA biogenesis [BR:
bsc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
COCSADRAFT_90927
Prokaryotic type
COCSADRAFT_90927
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Taq-exonuc
Motif
Other DBs
NCBI-GeneID:
19141375
NCBI-ProteinID:
XP_007700607
JGI:
Cocsa1_90927
UniProt:
M2SMJ4
LinkDB
All DBs
Position
Unknown
AA seq
625 aa
AA seq
DB search
MSDNEGPRRDHGSSNGDRGDKKRKWADRDRRNAARGGGGRQQHGSRPNKKRNMGRKEHNS
SQLDRRDRNAEQQAKYKEQDEKGENERPALPAAFPAEELEAEERRPKRKVAVMIGYSGTG
YKGMQIDNKQKTIEGDLFNAFVAAGAISKANASDPKKSSLVRCARTDKGVHAAGNVVSLK
LIIEDDDILEKINSHLPDQIRVWGIQRTIGSFSCYQACDSRWYEYLIPTHSFLPPHPSSY
LGKKLEEYAEIENDLEGYRKRQAEVADFWPEVEEKHIKPILESLDDSIQPLVLEALYNVD
AVDAQPGQDPVIDASIDDEPDKGKPATTEAAKETAMPDADETNTSEQPVDEVKQAIDAIK
QNEPNVTLNNSTDGTRPLPEGVVNQPVLEEAIKTLKKAYIDIKKAYRISPERQARVQAAL
DKYLGTHKYHNYTVHKKFNDKSAQRYIKSFKVAPKPIIINDTEWLSLKVHGQSFMMHQIR
KMVGMAALTVRCGTDPAIMDKSFGNEVVRIPKAPGLGLLLERPVFDSYNAKLAKQHARDP
IDFNKYNDKIEEFKEREIYQRIFREEAQGNQFNTFFTHLDNYKDPQFLYLTSGGIEATKR
KREDKSVQRNFEEDSEDENASGGEG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaacgaaggcccccgccgcgaccacggctcgtcgaatggcgaccgaggtgac
aagaagcgcaaatgggcagatcgcgatcgcagaaatgctgcgcggggaggtggtggacgc
caacagcacggaagccgtccgaataagaagagaaatatggggcgtaaggagcataattct
tcccaattagatcgacgggatcgcaatgccgaacagcaagccaaatataaagagcaggac
gagaaaggtgaaaatgagcgaccagctctacccgcagcttttcctgctgaagagctcgaa
gccgaggagcgcaggccgaagcgcaaagtcgcagtcatgattggttattcaggcactggc
tataagggcatgcagatcgacaacaagcagaagacgattgaaggcgatctgttcaacgct
ttcgttgcggccggcgcaatctccaaggcgaacgcatctgaccccaaaaagtcgtccctt
gtgcgttgcgctcgtaccgacaagggtgtacacgctgccggcaacgttgtgtctttgaaa
ttgatcatcgaggatgacgatattctcgaaaagatcaacagtcatttgcccgaccagatc
agggtctggggtatccagcgaacgatcggctccttcagctgctaccaggcatgcgactcg
agatggtacgaataccttattccgacgcactcgttcctcccaccacacccttccagttac
ctgggcaagaagctggaagagtatgcagagatagagaacgatctagaggggtaccgtaag
aggcaagccgaggtcgcagacttttggcccgaagtcgaggagaagcacatcaaacctatc
ttagagtctctggatgactcaatacagccgctcgttctagaagcactttacaacgttgac
gctgtcgatgcgcaacccggtcaagaccccgtaatcgacgcttcaatcgacgatgagccc
gataaagggaaacctgcgaccaccgaagctgctaaggagactgcaatgccagatgcagac
gagaccaacacgagtgaacaacctgtagatgaggttaagcaggccatcgacgcgataaag
cagaacgaacccaacgtcactctcaataactccaccgacggcacgcgccctctgcccgaa
ggcgtcgtgaatcagcctgtccttgaagaagccatcaagacgctcaaaaaggcctacatt
gacatcaagaaggcctaccgcatctctcccgagcgacaagcgcgcgtccaagccgcactc
gacaagtatctcggaacccacaaataccacaactacaccgtccacaagaagttcaacgac
aaatccgcccagcgctacatcaaaagcttcaaagtcgcacccaaacccatcatcatcaac
gacaccgaatggctaagcctcaaagtccacggtcaaagctttatgatgcatcagatccgc
aaaatggtcggcatggctgccctaacagttcgctgcggtactgatcccgccatcatggac
aagagcttcggcaacgaggtcgtgcgtattcctaaagcaccgggcttgggcttacttctt
gagcgccctgttttcgactcctacaacgccaaacttgccaaacagcatgctcgcgatccc
atcgatttcaataagtacaatgataagattgaggaatttaaggagagggagatttatcag
aggattttccgggaggaggcgcaagggaatcagttcaataccttttttacccacttggat
aattacaaagatccgcagttcctgtacctgacgtctggaggtatcgaggcgaccaagagg
aagcgtgaagataagtctgtgcagcgcaactttgaagaggattctgaggatgagaatgct
agtggtggagagggttga
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