Bipolaris sorokiniana: COCSADRAFT_96596
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Entry
COCSADRAFT_96596 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K18748
protein SSD1
Organism
bsc
Bipolaris sorokiniana
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_96596
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
COCSADRAFT_96596
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
DUF7691
Motif
Other DBs
NCBI-GeneID:
19141689
NCBI-ProteinID:
XP_007702874
JGI:
Cocsa1_96596
UniProt:
M2SX91
LinkDB
All DBs
Position
Unknown
AA seq
1360 aa
AA seq
DB search
MDQQQGQQGPMGPAGRRLHIAHRRSPSELTPLMMEQLAIAQQIEVLQQQQQQIAATHQQY
VNMGMIQPQQQLGNFQMQGQMPNVSPQVNNYQFAQQMPQQQQHLAVPMNAPAQPSAHRRN
QSALPNVGLGPPPAPSSGASGFGDFGAQQGGQGRENVNPRGRGGGGAGGSGHTRRHSLAL
ADAKKAAEQAESKRKTSGFQFPIPGSNEGSSNRDASPGAPGAANDTPSGRGGRGAHGRSQ
SMAVGRGGGGAGRGGPSFSFPATSENPTNQATQQGEFQRRGSQGHGRSQSRNFEGNWRQP
QNNNQQQSTQDNQSQNMGNFNMNQTANAAPFQPGHRSRGSVNQSLGGLGNFQYAGQPQMQ
MQSPQAQLLLQQQMFGQPLNPMQIAHLQALQAAQMQGGLGGSQHAPQMNMQQQQQQQRKT
LFTPYLPQATLPALLGDGQLVAGILRVNKKNRSDAYVTTTDLDADIFICGSKDRNRALEG
DLVAVELLDVDEVWGQKREKEEKKKRKDNADPRGASIAVNDATTQPETGSEGGIRRRGSL
RQRPTQKKNDDVEVEGQSLLLMEEEEINDELKPLYAGHIVAVIERVAGQMFSGSLGLLRP
SSQATKEKQEAERQAREGNTGRTQPERQDKPKIVWFKPTDKRVPLIAIPTEQAPRDFVEK
HQEYADRIFVACIKRWPITSLHPFGTLVEQLGVMGDLKVETDALLRDNNFGPDDFSDAVI
KNVGFEDWSVVNDGEEALKNRRDFRGEETFTIDPNGSKELDDAIHFKYLDDGRVEIGVHV
TDIAHFIKANSLVDREAKKRGTAVYLMNRTVNMLPPKLSNDICCLNPGEERYTVSVVFKA
DPASGKVFEDETWIGKSVIKSSGKLSYDEVDSVISGNDDSVSAARAKDIKMLHHISQKFR
QTRFGDRVSDVKALRLMYQLDDENVPVEQNIFDSSPAHECIEELSHLVNATVAKKLAAGL
PEKALLRRQAPPNPRRLMTIAERMGAIGYELNTESSGSLQNSLFEVEDDDLRKGMETLVI
KSMPRAKYFIAGKLPEEQYPHYALNLPRYTHFTNPSRRYADIVVHRQLEAVLSNGAIEFT
EDIEALAKTAEMCNTKKDSAHSAQEQSVHIEACRKMDKVRQESGGDLIAEGIVLCVYESA
FDVLIPEWGFEKRVHCDQLPLKKAEFDKNKRLLELYWEKGVPSSNYIPEDERPKHGSLRS
ANAAAAAREAEAAKQRAREQEEAQRRQMDTGTMSTNEEAALFDDDDDDDDANDLNSNMAG
VSLNPDRPTQSMPPSPTRRDLPGAPHRVNSDSKIAQSAGEAAENKLTNKEKYLSWFTLRE
ENGDYIQDVREMTRVPVILKTDLTKSPPCLTIRSLNPYAL
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcaacaaggccagcagggccccatgggtcccgccggccgccgtcttcacatt
gcgcatcgccgcagtccctcagagctgacgccactgatgatggaacaactagccattgca
cagcagattgaagtcctccagcagcaacagcagcagatcgccgcaacacaccagcaatat
gtcaacatgggtatgattcagccacagcagcagctgggcaacttccagatgcagggccaa
atgcccaacgtctctccccaagtcaacaactaccaatttgcccagcagatgccccagcaa
caacagcatctcgctgttccaatgaacgctcccgcccagccctccgcccaccgccgcaac
cagtccgccctacccaacgttggtctgggtcccccacccgcaccctcttccggagcctct
ggattcggcgattttggtgcacaacaaggtggccaaggtagagagaatgtaaaccctcgt
ggccgcggcggtggtggtgctggtggctctggtcacacccgtcgccactcactcgctctc
gcagatgccaagaaggctgctgagcaagccgaatcgaagcggaagacttcgggcttccag
ttccccatcccaggctcaaatgagggcagctccaaccgtgatgcaagccctggcgcacct
ggtgctgccaacgacactccttcaggccgaggtggacgaggcgcccacggccgtagccag
agcatggctgtcggacgtggtggcggaggcgccggccgaggtggaccatctttctcattc
ccagctacaagtgagaaccctaccaaccaggctactcagcagggcgagttccaacgccgt
ggcagccagggtcatggccgcagccaatcacgcaactttgagggcaactggagacagccc
cagaacaacaaccagcagcagtctactcaagacaaccagtcccagaacatgggcaacttc
aacatgaaccaaaccgccaatgccgctcctttccaacccggtcaccgcagtcgtggatcg
gtcaaccagtcccttggtggtcttggcaacttccagtatgctggccagccacagatgcag
atgcagtcacctcaggcccaactcctgctgcaacagcagatgttcggtcagccactgaac
cctatgcagattgctcacttgcaggcccttcaggctgctcagatgcaaggtggcctcggc
ggcagccagcatgctccgcagatgaacatgcagcaacagcaacagcagcaacgcaagaca
ctattcactccttaccttccacaggcaaccctgcctgcccttctcggcgacggccaactc
gttgccggtatcctccgcgtcaacaagaagaaccgcagcgatgcctatgtgacgactact
gacctggatgctgacattttcatctgtggtagtaaagacaggaaccgagctcttgaagga
gatctcgttgctgttgaacttcttgacgttgacgaagtgtggggacagaaacgcgaaaaa
gaagagaagaagaagcgcaaggacaatgctgaccctcgcggtgctagtattgccgttaac
gatgccaccacgcaacctgaaactggctctgagggtggtatccgtcgacgtggcagtctt
cgccaacgaccaacacagaagaagaatgacgatgttgaagtcgagggacaaagcttgctc
ctcatggaggaggaggaaatcaacgatgagctcaagcctttgtacgcaggccacattgtt
gctgtcatcgagcgtgtcgcaggacaaatgttctctggttctctcggactcctccgccct
agcagccaagctacaaaggagaagcaggaagccgagcgccaagctcgcgaaggcaacact
ggccgaactcaaccagagcgtcaggataaacccaagattgtctggttcaagcctacagac
aagcgtgtacccttgattgctatccctactgaacaagcaccacgggactttgtcgagaaa
catcaggaatatgcggaccgcattttcgtggcgtgcatcaagcgatggcccattacatcc
ctgcatccctttggtacccttgttgagcagcttggtgtcatgggtgaccttaaggtggaa
accgatgccctcctgcgcgataacaacttcggcccagacgacttctctgacgccgttatc
aagaacgttggcttcgaggactggtcggtcgtcaacgacggcgaagaggccttgaagaac
cgtcgcgatttcaggggtgaggagacattcaccatcgaccccaacggcagcaaggagctc
gatgatgccattcacttcaagtacctcgacgacggccgcgtcgagattggtgtccacgtg
accgacattgcccactttatcaaggccaactcacttgtcgaccgtgaggccaagaagcgc
ggaactgccgtgtacctcatgaaccgcacagtcaacatgctgccccctaagctgtccaac
gacatctgctgcctcaacccaggtgaggagcgctacacggtcagtgtcgtcttcaaggcc
gatccggcttctggcaaggtttttgaggatgagacttggattggcaagtctgtgatcaag
agctctggaaagctatcgtatgacgaggtcgactccgttatcagcggtaacgatgattca
gtctcggcagcccgtgctaaggacatcaagatgctgcatcacatctcgcaaaagttccgc
cagactcgctttggcgatcgcgtttccgatgtcaaggctctgcgcctaatgtaccaattg
gacgacgagaacgttcccgtcgagcaaaacatttttgactcttctcctgcgcacgaatgc
attgaagagctcagccacctcgtcaacgccacagttgcgaagaagcttgcggcaggtctg
ccagaaaaggctcttctgcgccgccaagcacctcctaacccccgccgattgatgacaatt
gcggagcgcatgggtgccattggatacgaactcaacacagagagcagcggttctctccag
aacagcttgttcgaggttgaagatgacgatctccgaaagggtatggagaccttggttatc
aagtcgatgccccgtgccaagtactttatcgcgggcaagctacctgaggaacagtatcca
cactacgccctcaacctccccaggtacactcacttcaccaacccatcccgtcgctatgcc
gacattgttgtgcaccgccagctggaggctgtcctgtcaaacggcgccatcgagttcacc
gaagacattgaggctctcgccaagactgctgagatgtgcaacaccaagaaggactcggct
cactctgcccaagagcagagcgttcacattgaagcctgccgcaagatggacaaggttagg
caggaaagtggcggtgacctcatcgcggaaggtatcgtcctctgcgtgtacgagtctgct
ttcgacgtgctcattcctgagtggggtttcgagaagcgcgtccactgtgaccagcttccc
ctcaagaaagccgagttcgacaagaacaagcgtctgcttgagctctactgggagaagggt
gtcccatcatccaactacatcccagaggacgagagacccaagcatggctcactccgttcg
gccaatgctgccgcagctgcgcgcgaggctgaagcggcgaagcaacgtgcgagggaacaa
gaagaggctcagcgcagacagatggacaccggcaccatgtccaccaacgaggaggctgcg
ctgtttgacgacgacgatgacgacgatgatgccaatgacctcaactcgaacatggctggt
gtatcgctgaaccccgaccgcccgactcagagtatgcctccgtcgcccaccaggcgcgat
cttcctggcgctcctcaccgcgtcaactcggattcgaagattgctcaaagtgccggtgag
gctgcggagaacaagttgaccaacaaggagaagtacctaagctggttcactctgcgtgag
gagaatggcgactacatccaggatgtacgggagatgactagggttccagtcattcttaag
acggatctgaccaagagtcctccttgcttgaccatccgatccctgaacccatatgccctc
tag
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integrated database retrieval system
