Bifidobacterium scardovii: BBSC_0294
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Entry
BBSC_0294 CDS
T03975
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bsca
Bifidobacterium scardovii
Pathway
bsca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBSC_0294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsca03021
]
BBSC_0294
03019 Messenger RNA biogenesis [BR:
bsca03019
]
BBSC_0294
Transcription machinery [BR:
bsca03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBSC_0294
Messenger RNA biogenesis [BR:
bsca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBSC_0294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
SAP
PIP5K
NACHT
FANC_SAP
Motif
Other DBs
NCBI-ProteinID:
BAQ30374
LinkDB
All DBs
Position
371589..373685
Genome browser
AA seq
698 aa
AA seq
DB search
MATSQNLEDMKLPELKELAKQMGLRGTSTMRKPDLLATLQAARSGGEAPAGVSVRAPRTD
AKAASAQEAAPANTESPAAEAAPSAPAPAKAAEPAAESPASEPAQEPSAKRKPSRKAERP
AGQPAARHSAAERSDAPAKAAAEQPSIDLPEVKESRPANTRKRRHESDAGAALLDDLGLD
ADNGRRRKVDKEESVPRRRRDMAADEDQPRRRRRMAEPDAPAEDTVRDLDDILATLPSQH
DANRADRDDDAQPEREFTRRSRNRSDRGNDRNDRGDRNDRNDRRQRRLRGRDRDYEDRDE
RETRDVRDNRREEPQEDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYVSMGQVKKYGLRK
GDAVHGSIRAPREGDRRNQRQKFVPLQSIDSINGMSVEDAANRPQFAKLTPLYPQERLKQ
ETTPNKLTGRIMDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIATNNPEVHLMVVLVD
ERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRL
ARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEV
IFEEFKGTGNMELRLSRELADKRLFPAIDINASGTRREELITAPAELPVVYRLRRLLGGL
EPEQAYQTLVPRLKKAPTNRDFLAAISQQANSNAVNGN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaccagccagaatcttgaggatatgaagctacccgagctcaaggagctcgccaag
cagatgggacttcgcggcacctcgacgatgcgcaagcccgatctgctcgccacgctacag
gccgcccgttccggtggcgaggcgccggccggcgtcagcgtgcgcgcgccccgtacggac
gccaaggcggcttccgcgcaggaagcggccccggccaacaccgaatctccggccgcggaa
gcggctccctccgccccggctccggcaaaggccgccgagcccgccgcggaatcgccggcg
agcgaaccggcccaggaaccgtccgcgaagcgcaagccgtcccgcaaggcggagcgcccg
gcaggccagccggcggcgcgtcattccgccgccgaacggtccgacgccccggcgaaggcc
gccgccgagcagccttccatcgatctgcccgaggtcaaggaatcccgccccgccaacacg
cgcaagcgccgccacgaaagcgatgccggtgccgcgctgctcgacgatctgggcttggac
gccgataacggccgccgccgcaaggtcgacaaggaggaatccgtgccgcgccgccgccgc
gatatggccgcggacgaggatcagccgcgtcgccgccgccgtatggccgagccggatgcc
ccggccgaggacaccgtgcgcgatctggacgatattctcgcgaccctgccgtcgcagcac
gacgccaatcgcgccgatcgcgacgatgacgctcagccggagcgcgagttcacccgccgc
agccgcaaccgttccgatcgcggcaacgaccgtaacgaccgtggcgaccgcaatgatcgc
aatgaccgccgtcagcgccgcctgcgcgggcgcgaccgcgattacgaggatcgcgacgag
cgcgagacccgcgacgtgcgcgacaaccgccgcgaggagccgcaggaggaccttgtcccg
gtcgccggcatcgtcgacgtgctcgactcctatgcgttcgtgcgcacctccggctacctg
cccggtccgaacgacgtgtacgtgtccatgggccaggtcaagaagtacggtctgcgcaag
ggcgacgccgtgcacggttcgatccgcgcgccgcgcgagggcgaccgccgcaaccagcgc
cagaagttcgtgccgctgcagtccatcgactcgatcaacggcatgagcgtcgaggatgcg
gccaaccgcccgcagttcgccaagctcaccccgctgtatccgcaggagcgcctgaagcag
gagaccacgccgaacaagctcaccggccgcatcatggacatcgtgtcgccgatcggcaag
ggccagcgcggtctgatcgtctctccgccgaaggccggcaagacgatcacgttgcagaac
atcgccaacgcgatcgcgaccaacaaccccgaggtgcatctgatggttgtgctggtggac
gagcgtcccgaagaggtcaccgatatggagcgcaccgtgcagggcgaggtcatctcctcg
accttcgaccgcccggcctccgaccacaccaccgtcgcggagctggccatcgagcgcgcg
aagcgccttgtggagctcggccaggacgtggtggtgctgctcgactcgatgacccgtctg
gcccgcgcgtacaacatcgccgctccggcctccggccgtatcctgtccggcggcgtcgac
gcgcaggcgctgtacccgccgaagaagttcttcggtgcggcccgcaacatcgagaacggc
ggctcgctgacgattatttcgtccgcgctggtggaaaccggctcgaagatggacgaggtg
atcttcgaggagttcaagggcaccggcaacatggagctgcgcctgagccgtgagctggcg
gacaagcgcctgttcccggccatcgacatcaacgcctccggcacccgccgcgaggagctc
atcaccgcgccggccgagcttccggtcgtctaccgcctgcgccgtctgctcggcggtctg
gagcccgagcaggcgtaccagacgctggtgccgcgcctcaagaaggcgccgaccaaccgc
gacttcctcgccgccatcagccagcaggccaacagcaacgccgtcaacggcaactga
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