Bifidobacterium scardovii: BBSC_0962
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Entry
BBSC_0962 CDS
T03975
Name
(GenBank) putative DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bsca
Bifidobacterium scardovii
Pathway
bsca03420
Nucleotide excision repair
bsca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBSC_0962
03430 Mismatch repair
BBSC_0962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsca03400
]
BBSC_0962
Enzymes [BR:
bsca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBSC_0962
DNA repair and recombination proteins [BR:
bsca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBSC_0962
MMR (mismatch excision repair)
Other MMR factors
BBSC_0962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BAQ31042
LinkDB
All DBs
Position
1144529..1146031
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AA seq
500 aa
AA seq
DB search
MDASAEHMLEGLDEAQRAAATTLHGPVRIIAGAGAGKTRTVTRRIAYACATGQWEASGAL
AVTFSVKAAAEMRSRLASLGVGDQVTAATFHSAALHQLRRVWDDVCDAPFPRLADDPEPR
RIVGIALRHACGADADDPTVRAVQAEINWAKISLVAPGDYPRVCAAMHRQPPAGLDPQRF
ADVYDSYEQEKTSRGLIDFDDILLVACHVLDDFEDAADRIRRSIRWLTVDEYQDVSPLQH
RLLTLWLGDNRNVCVVGDPAQTIYSFAGASSYDLLAFADQFGPLAADVSLNTDYRSTPQI
VRYANRVLAAAPNRQDYLKLVSARESGARVSHTVYDTDDEEARGVAGRILRLAANGVDPS
DCAVLTRINAQQPAVCSALRAAGLRYRVRRDAGWSGGGVDDDAAQRQAKLEQLGVGGVAG
AVTVSTIHASKGLEFKQVFLIGCSEGLMPYGSPAGGEVLEEERRLMYVGVTRAEDGLHMS
YARTKDGTAGRARVPSRFLT
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatcggcggaacacatgcttgaggggctcgacgaggcgcagcgcgccgcggcg
acgacgctgcacggcccggtacgcatcatcgccggcgccggcgccggcaagacccgcacg
gtcacccgccgcatcgcctatgcctgcgccaccgggcagtgggaggcgagcggcgcgctg
gccgtcaccttctcggtcaaggcggccgccgagatgcgctcgcgcctcgcctcgctcggc
gtgggcgaccaggtgacggcggccaccttccattcggcggccctgcatcagctgcgccgc
gtatgggacgacgtgtgcgacgccccgtttccccggctcgccgacgacccggagccgcgg
cgcatcgtcggcatcgccctgcggcacgcgtgcggggccgacgccgacgacccgaccgtg
cgcgccgtgcaagccgagatcaactgggcgaagatctccctggtggcgccgggcgactac
ccgcgcgtctgcgcggccatgcaccgccagccgccggccgggctggacccgcagcgattc
gccgacgtctacgacagctacgagcaggagaagacgtcccgcggcctgatcgacttcgac
gacatcctgctcgtcgcctgccatgtgctcgacgatttcgaggacgcggccgatcggatc
cgccgctcgatccggtggctgaccgtcgacgagtaccaggacgtctcgccgctgcagcac
cggctgctgaccctgtggctgggcgacaaccgcaacgtgtgcgtggtcggcgaccccgcg
cagacgatctactcgttcgccggcgcgagcagctacgatctgctggccttcgccgaccag
ttcggccctctggccgccgacgtcagcctcaacaccgactaccggtccacgccgcagatc
gtgcggtacgcgaaccgcgtgctcgccgccgcgccgaaccggcaggactatctcaagctc
gtctccgcccgcgaatccggcgcccgcgtgagccacaccgtctacgacaccgacgacgag
gaggcgcgcggcgtggccggccgcatcctgcgtctggccgcgaacggcgtcgatccgtcc
gactgcgcggtgctgacccgcatcaacgcgcagcagccggcggtgtgctcggccctgcgc
gcggccggcctgcgctatcgggtccgccgcgacgccgggtggtcgggcggcggcgtggac
gacgacgccgcgcagcgccaggcgaagctggagcagctgggcgttgggggcgtggccggc
gcggtgaccgtgtccaccatccatgcctccaagggcctcgaattcaagcaagtgttcctt
atcggctgttcggagggactcatgccctacgggtcgccggccggcggggaggtgctcgag
gaggagcgccggctcatgtacgtgggcgtcacccgcgccgaggatggcctgcacatgtcg
tatgcgaggaccaaggacggcacggccggcagggcccgcgtgcccagccgtttcctgaca
tga
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