Bifidobacterium scardovii: BBSC_1319
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Entry
BBSC_1319 CDS
T03975
Name
(GenBank) putative cell surface protein
Organism
bsca
Bifidobacterium scardovii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
RCC1_2
SdrD_B
CarboxypepD_reg
SpaA
CarbopepD_reg_2
NOMO_3rd
Motif
Other DBs
NCBI-ProteinID:
BAQ31399
LinkDB
All DBs
Position
complement(1577696..1583200)
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AA seq
1834 aa
AA seq
DB search
MMNVLRRPAAMITVAATLMVGLAVAADASVRSAAGVEARPSYATAKLVKIVDGTGHGTAA
QSFVNSRNGFQPGDDAPDDGIVSSGDVVEYALRLSFTAAAKRQVRVAWDLRESPWLSAGD
AATGFCSSGQQVSAKRDGDACVYTVNAGAVEVLDQRLVLRAKDTEGTAKTGQKPRLTVSR
VGEDSSTVSYPTDEVTVVSAPAADLIIDNGGYPDKPHEAWARRNEWVASGTISGYFDLKV
KPLTYPGYTTSHGASISGPWSASVDVSAFPEGSTFSVDGTMLPVRDGRLRLGGMRGDKRL
DWSVPAERVADMKQNDTRIYDIAVIPDKTSFSADGGNALLNMGDGTEPGMNAKRDKDTGS
RDTGAKSGYPYANNDWSRAIIERNNTRGSVFSKLLQRPYTPGKTLFDPESQDFAKASSDQ
TIIHYYSADQNGDTVATGTQTRVTLSMAADRIEGVLSSDPVLGDEWDPTQQQWQGGLSVT
RGGKPLDQGVDWNASYTYDDPRSGNAAWHDGVPADTDAKVRAIRVSFDRARFQSAADTGT
VRVVFLTRVTVDAARGNVKSSDTMTGEFTTDQETARAEGDNFVWVIAPSEPAASIDTAVT
VTDGMGTERADGAQPGDTAGYVIRPRLTNIQRSGTVVKPTITVTYPDGLLDPVMAGGPWK
LTISGSGAGRTITFTYDSPDGTLIPELGVDGSVDLPAIEWRATVGNKAAGTISAAATQTT
DIAQNGTVPAHPQVTSNTAVAQFIVDAKAGETGALNALTGKTGIGDSLSWRFNLYAKGSG
RTGGADTIVRVPSNDDAIMAGDNNTGLDGSWREYDRGHSAYHGTWKLTEPVSVNAANSTA
TSILYSTSVAWTDEPDDYEWKTWEQLSDEDKSRITAIRVRSDFETGSDGNMPVAAADGTI
TLIPTDGTKDDRYVMWPGRTRFSDGHAMGNLPWADAVTATAGSISGTLWWDRNENTLIDA
GEECIGGIEVSLWRADENGGRMGDAPLRTVNSDGDGRYEFDLLHAGNYRVQVKRSTGTST
GDGVQTSVTTYYSQDKPVAGTRSWNSRLKGQARDESDVIRLTVGADQQRVDFGYAKPDPK
ATLDKTQTRLSCTADSCEINWDVKVTNSGKTTDKIHIPPTISNGGANSFALDSTGHLWAW
GDNSFGQLGDGTTTERHTPVAVTPDRTYTTVSTGTYHSLALDSTGHLWAWGDNSFGQLGD
GTTTERHTPVAVTPDRTYTTVSTGTYHSLALDSTGHLWAWGDNSFGQLGDGTTTERHTPV
AVTPDRTYTTVSTGTYHSLALDSTGHLWAWGDNSFGQLGDGTTTERHTPVAVTPDRTYTT
VSTGTYHSLALDSTGHLWAWGDNSFGQLGDGTTTERHTPVAVTPDRTYTTVSTGTYHSLA
LDSTGHLWAWGDNSFGQLGDGTTTDRRAPVEITPDRTYAMASDASPESAGTGNLPADSVL
SDRMSGIVENVRATAGTVSRTEDSYNTFKQVSSSSFHTLALDSSGHVWTWGSNSNGQLGD
GTNTDRQTPADVTTVTQGVAVDPTAVPVDPVSETQDGGDVIRTYNPPYTIAPGGYIVFHF
TGTVSRAQADRIVHNQAWFDSPDTPYAGTPHALRENTTTPFKPDDTKLDRSSHDITGNPS
CRTGTDYRNPGMEHWFSNGNEDSCDQVGALIPAYTTEPVRGSISGMYWRDQNRDGIRQDT
ETDRIPGLSVILENQAGERISTTVTDRNGAYRFDKLPLGSYRIRFSRVPRADFTTPDASD
ANPVVDSSSTDSDAGTGEDYGMGTPLITLTETTPDRDHIDAGVLADKPWTGILPHTGLFV
LPCLMILALAAMIASILLLRQPAAKERDSEKHGS
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacgttcttcgacgtcccgccgccatgatcaccgtggcggcgacgctgatggtg
ggattggccgtggcggccgacgcgtccgtccggtccgccgccggcgttgaagccaggccc
tcgtacgcgaccgccaagctcgtgaagatcgtggacggcaccgggcacgggaccgcggcg
caatcgttcgtgaacagcaggaacgggttccagccgggcgatgacgcgccggatgacggg
atcgtgtccagcggtgacgtggtcgaatatgcactgaggctgtcgttcaccgcggccgcg
aaacgccaggtgcgggtggcctgggaccttcgggagtcgccctggctgtccgccggcgac
gcggcgacgggattctgctcgtccgggcagcaggtgtccgccaagcgtgacggggacgcg
tgcgtgtacacggtcaacgccggcgccgtggaagtcctggaccagcggctggtgttgcgg
gcgaaggacacggaaggcaccgcgaaaaccggacagaagccgcggctgaccgtgagccgg
gtcggagaggattcgtccacggtctcgtacccgaccgatgaggtgacggtcgtcagcgcg
ccggccgccgatctgatcatcgacaacggcgggtaccccgacaaaccccatgaggcgtgg
gcacgccgcaacgaatgggtcgcatcgggaacgataagcggatacttcgatttgaaggtg
aaaccgctcacctatccggggtacaccacgtcgcacggcgccagcattagcggcccgtgg
tcggcgagcgtggacgtcagcgcttttcccgagggcagcaccttcagcgtggacggcacg
atgctgccggtgcgcgacggcaggctgcgcttgggggggatgcgcggcgacaagaggctg
gattggagcgtgccggcggaacgggtcgcggatatgaagcagaacgacacgcgcatctac
gacatcgcggtgatccccgacaagacaagtttcagcgccgacggggggaacgcgctgctg
aacatgggcgacggaaccgaacccggcatgaacgcgaaacgcgacaaggacaccggttcg
agggacacgggggcgaagagcggctacccgtacgcgaacaacgactggtcgcgcgccatc
atcgaacgaaacaacacacgggggtccgtgttctccaaactgctgcaacgcccgtacacg
ccaggaaaaaccctgttcgaccccgaatcgcaggatttcgcgaaggcctcgtccgaccag
acgatcatccactactattcggcggaccagaacggcgacacggtcgcaacgggaacgcag
acgcgcgtcacgctcagcatggcagccgacagaatcgagggcgtcctgtcctccgatccc
gtgctgggcgacgaatgggacccgacccagcagcaatggcagggaggcctgtccgtcacc
cgcggcgggaagcccttggaccagggcgtggactggaacgcatcatacacgtatgacgat
ccccgatcgggcaacgcggcgtggcatgacggcgtgcccgccgacaccgatgcgaaggtg
cgggcgatccgcgtcagcttcgaccgcgcgcggttccagtcggccgcggacacgggcacg
gtccgggtcgtcttcctgacgcgcgtgaccgtcgacgcggcgcggggcaacgtgaaaagc
tcggacacgatgaccggagaattcacgaccgaccaggagacggcgcgcgccgaaggcgat
aacttcgtatgggtcatcgcaccgtccgaaccggcggcgtccatcgataccgcggtcacg
gtcacggacgggatgggaacggaacgggccgatggcgcgcagccgggggatacggccgga
tacgtgatccgcccgcgtctgacgaacatccaacgctccggcaccgtggtcaagcccacg
atcacggtcacgtatccggacgggctgctcgacccggtgatggccggcgggccatggaag
ctcacgatcagcggatccggagcgggcaggacgatcacgttcacgtacgattcgccggac
ggcaccctgatccccgagctgggcgtggacggctccgtcgatctgccggccatcgaatgg
cgggcgaccgtgggcaacaaggccgcgggcacgatcagcgccgccgccacccagacgacg
gacatcgctcagaacggcacggtccccgcccacccgcaggtcacgtcgaacacggccgtc
gcccagttcatcgtggatgcgaaagccggggaaaccggcgcgttgaacgccctgaccggc
aagacgggcatcggcgattccctgtcctggcgcttcaacctgtacgccaaaggatcggga
cgtaccggcggcgcggacacgatcgtgcgcgtgccctccaacgacgacgcgatcatggcc
ggagacaacaacacgggcctggacggctcctggcgcgaatacgaccgcggccactccgcg
taccacggcacgtggaagctgaccgagccggtgtccgtgaacgcggccaacagcacggcg
acgagcatcctgtattcgacgagcgtcgcctggacggatgaaccggacgactacgagtgg
aaaacctgggaacagctgagcgacgaggacaagtcgaggatcaccgcgatccgcgtccgg
tccgatttcgagaccggttccgacgggaacatgcccgtggccgccgcggacggcacgatc
accctcatccccacggacggcacgaaggacgaccggtacgtcatgtggcccggccgcacc
cggttcagcgacgggcatgccatgggcaacctgccctgggccgacgcggtcacggcgacc
gccggatcgatcagcggcaccctgtggtgggacaggaacgagaacaccctgatcgacgcc
ggggaggaatgcatcggcggcatcgaagtgagcctgtggcgcgccgacgagaacggcggc
cgcatgggcgacgcgccgttgaggaccgtgaacagcgacggcgacggccgatacgagttc
gacctgctgcatgccgggaactaccgcgtgcaggtgaagcgctcgacgggcacgagcaca
ggcgacggcgtgcagaccagcgtcaccacgtactattcgcaggacaagcccgtggccggc
actcgatcgtggaactccagactcaagggccaggcacgcgacgaatcggacgtgatccgg
ctgacggtcggcgcggaccagcagagggtcgatttcggatacgcgaagcccgaccccaaa
gccaccctcgacaaaacgcagacccgcctgtcatgcaccgccgactcatgcgagatcaac
tgggacgtgaaggttaccaatagcggcaaaaccaccgacaaaatccatataccccccaca
atttccaatggaggcgcgaactccttcgcattggattcgaccggccacctatgggcatgg
ggcgacaacagcttcggccagctgggcgacggcaccaccaccgaacggcataccccggtt
gcggtcacgcccgaccgcacgtacaccacggtatccaccggaacgtatcattccctggca
ctggattcgaccggccacctatgggcatggggcgacaacagcttcggccagctgggcgac
ggcaccaccaccgaacggcataccccggttgcggtcacgcccgaccgcacgtacaccacg
gtatccaccggaacgtatcattccctggcactggattcgaccggccacctatgggcatgg
ggcgacaacagcttcggccagctgggcgacggcaccaccaccgaacggcataccccggtt
gcggtcacgcccgaccgcacgtacaccacggtatccaccggaacgtatcattccctggca
ctggattcgaccggccacctatgggcatggggcgacaacagcttcggccagctgggcgac
ggcaccaccaccgaacggcataccccggttgcggtcacgcccgaccgcacgtacaccacg
gtatccaccggaacgtatcattccctggcactggattcgaccggccacctatgggcatgg
ggcgacaacagcttcggccagctgggcgacggcaccaccaccgaacggcataccccggtt
gcggtcacgcccgaccgcacgtacaccacggtatccaccggaacgtatcattccctggca
ctggattcgaccggccacctatgggcatggggcgacaacagcttcggccagctgggcgac
ggcaccaccaccgaccgtcgtgccccagttgagatcacgcccgaccgcacctatgccatg
gcgtcggatgcctccccggagtcggccggtaccgggaacctgccagccgacagcgtcctg
tccgaccggatgagcggcatcgtcgaaaacgtgagggcgaccgcgggcacggtcagccgg
accgaggactcctacaataccttcaaacaggtatcctccagtagtttccataccttggcg
ttggactcctccggccacgtatggacctggggcagcaattccaacggccagctgggcgac
gggaccaacaccgatcggcaaaccccggccgatgtgaccacggtcacgcagggcgtggcc
gtggatccgacggcggtcccggtcgaccccgtatcggaaacgcaggatggcggcgacgtg
atccgcacgtacaacccgccgtacacgatcgcgccgggaggatacatcgtgttccatttc
accggtaccgtgagccgggcccaagcggatcggatcgtccacaatcaggcatggttcgac
tcgccggacaccccgtacgcgggcacgccgcacgcattgcgcgagaacaccacgaccccg
ttcaaaccggacgacacgaaactcgaccggtcgagccacgacatcacgggcaacccctcc
tgccgaaccggcacggattaccggaacccgggcatggagcactggttcagcaacggcaac
gaggactcctgcgaccaggtcggggcgctgatccccgcctatacgaccgaacccgtccgg
ggcagcatcagcggcatgtactggcgcgaccagaacagggacggcatcaggcaggatacg
gagaccgataggatccccggcctcagcgtcatcctcgagaaccaggcgggcgagcggatc
tccaccaccgtcaccgaccgcaacggcgcctaccggttcgacaagctcccgctcggctcg
taccgcatccggttcagccgcgtgccgcgcgccgacttcaccacaccggacgcgagcgac
gcgaatcccgtcgtggattcgtcgtccaccgactccgacgcgggcacgggggaggactac
ggcatgggcaccccgcttatcacgctgaccgagacgacgcccgaccgggaccacatcgac
gccggcgtgctcgcggacaagccgtggacgggcatcctgccccatactggtctgttcgtc
ctgccctgcctgatgatcctcgccctcgcggccatgatcgccagcatcctgctgttgcgc
cagccagccgccaaggaacgggactccgagaaacacggttcgtga
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integrated database retrieval system
