Bifidobacterium scardovii: BBSC_1879
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Entry
BBSC_1879 CDS
T03975
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bsca
Bifidobacterium scardovii
Pathway
bsca03030
DNA replication
bsca03430
Mismatch repair
bsca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bsca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBSC_1879
03430 Mismatch repair
BBSC_1879
03440 Homologous recombination
BBSC_1879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsca03032
]
BBSC_1879
03400 DNA repair and recombination proteins [BR:
bsca03400
]
BBSC_1879
Enzymes [BR:
bsca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBSC_1879
DNA replication proteins [BR:
bsca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBSC_1879
DNA repair and recombination proteins [BR:
bsca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBSC_1879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
BAQ31959
LinkDB
All DBs
Position
complement(2252568..2256125)
Genome browser
AA seq
1185 aa
AA seq
DB search
MAESGKNFVQLHNHTHYSLLDGASKIPNLVNRAKELGMPAVGITDHGNMHGAYEMWSTAV
KAGIKPIIGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHLTMWAESDEGLVNL
MKASSVANLEGRVARYPRMDKEVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGE
FQDIFGRDNFFIELMDHGLKIEQQVTNDLLTIAKKLNAPLLATNDSHYVLEEDRGAQDAM
LCINSGSRLDDPDRFKFDGSGYYIKSAEQMRELFKDLPEACDNTLEIAERCNVMFDDGED
GAFMPQFACPEGWDETSLFLKKVEEGLEKRYDGNPPLEVLKQADYECGVICQMQFCGYFL
VVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPIKHGLIFERFLNPERVSLPDI
DVDFDPDGRARVLEYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGERVTKA
LPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLIRQTGVH
ACATIMGSEPITDTSPLLERVDGTVTTTFEYHTCETLGLVKMDFLGLSNLTTIRDTLRNI
ELNGKEKIDYTKIPLDDKPTYDLLSRGDTLGVFQLDGDGMRSLLRTLKPTNFNDISALIA
LYRPGPMSMESHTNYAKRKNGLQKIEPIHPELDEPLKAVLDETYGLIIYQEQVQSAARIL
AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEQAANAIWEILVPFSGYAFN
KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRMGIQVLSPDVN
ESVYEYSAVGDVVRFGLGAIRNVGEAAVKDIIAERGTDRGRYVNFMDFIRRVPLTALNRR
LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVGLKRKQAEGQFDLFADTEDGGAEAMGD
AQVNVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQAVLAGLREMSIAHLIDRAKTMGD
GQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYETAAAELAIDQVVQI
RGQVEVRDETVSMRATEMQVPTLEAADERPLMLTLPQVALGRDNVQRLAQVLNAHPGYCE
VKLAVVDEQGNAQVLTFGDRFRVKRDTSLFAEIKILFGPSCLPVA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatcgggaaagaacttcgtgcaactgcataaccacacgcactattcgctgctg
gacggtgcgtcgaagatcccgaatctggtgaatcgcgccaaggaactgggcatgccggcg
gtcggcatcaccgaccacggcaacatgcacggcgcctatgagatgtggagcaccgcggtc
aaggccggcatcaagccgatcatcggcatcgaggcgtatgtgacgccggagaccgcgcgc
caggacaagtcgcgcgtgcactggggcaccgaggcgcagcgctccgacgacgtgtccggc
ggcggcctgatcacccacctgaccatgtgggcggaaagcgacgagggcctggtcaatctg
atgaaggccagttcggtggccaacctcgaaggccgcgtggcccgctacccgcgtatggac
aaggaggtgctctccacctattccaagggcgtgatcgcctcctccggatgcccctcgggc
atcatccagacccgactgcgcctggggcagttcgacgaggccctgcgcgccgccggcgag
ttccaggacatcttcgggcgcgacaacttcttcatcgagctgatggaccatggcctcaag
atcgagcagcaggtgaccaacgacctgctgaccatcgcgaagaagctcaacgcgccgctg
ctggccacgaacgattcgcactatgtgctcgaggaggaccggggcgcgcaggacgcgatg
ctgtgcatcaactcgggcagccgcctcgacgacccggaccgtttcaagttcgacggctcc
ggctactacatcaagtcggccgagcagatgcgcgaactgttcaaggacctgcccgaggcg
tgcgacaacacgctggagatcgccgagcgctgcaatgtcatgttcgatgatggcgaggac
ggcgcgttcatgccgcagttcgcctgcccggagggctgggacgagacctcgctgttcctc
aagaaggtcgaggaggggctggagaagcgctacgacggcaatcctccgctggaggtgctc
aagcaggcggactacgagtgcggcgtgatctgccagatgcagttctgcggctacttcctg
gtcgtggccgactacatcaactgggccaaggagcacggcgtgatggtcggcccgggccgt
ggatccgccgcaggcgcgatggtcgcctacgcgatgggcatcaccgagctcgacccgatc
aagcatggtctgatcttcgagaggttcctgaacccggagcgcgtgtccctgcccgacatc
gacgtcgacttcgacccggacggccgtgccagggtgctcgagtacgtggccgacaagtac
ggccacgacaaggtcgcccagtgcgtgatctacggcacgatcaagaccaagcaggcgctg
aaggattccgcgcgcatcatgggctacgagttctcggtgggcgagcgggtcaccaaggcc
ctgccccccgcggccacgggcggcaaggacatcagcctgcacgacatcttcgaccccagc
gcgaagcgctacgccgaggcccgcgaattccgcgagatgtacgactccgatccggacgcg
aagcgcatcacggaggaggctaagggcatcgagggcctgatccgccagaccggcgtgcac
gcctgcgccacgatcatgggttccgagccgatcaccgacacctcgccgctgctggagcgc
gtcgacggcaccgtcaccaccactttcgagtatcacacctgcgagacgctcggcctggtc
aagatggacttcctgggcctgtccaacttgacgaccatccgcgatacgctgcgcaacatc
gagctcaacggcaaggagaagatcgactacacgaagatcccgctcgacgacaagccgacc
tacgacctgctctcccgcggcgacacgcttggcgtgttccagctcgatggcgacggcatg
cgctcgttgctgcgcaccctcaagcccaccaacttcaacgatatctccgcacttatcgcc
ctgtaccgaccgggcccgatgagtatggaatcgcacaccaactacgccaagcgcaagaac
ggcctgcagaagatcgagccgatccaccccgagctggacgagccgctcaaggccgtgctc
gacgagacctacggcctgatcatctatcaggagcaggtgcagtcggccgcgcgtatcctc
gcaggctactcgctgggcaaggccgacgtgctgcggcgagccatgggcaagaagaagccc
gaggtgctggccaaggagaaggtgccgttcttcgccggcatgaaggagcacggctactcc
gagcaggccgccaatgccatctgggagattctggtcccgttctccgggtacgcgttcaac
aaggcgcattccgccgcgtacggcctgatctcctactggaccgcctatctcaagacgcat
tacccggtcgagttcatggcggccctgctgcagggcgcgtccacgaacaaggacaagacc
gccctgtacctgggcgaggcgcggcgcatgggcatccaggtgctgtcgccggacgtcaac
gaatcagtgtacgagtactccgccgtcggcgacgtcgtgcgattcggcctcggcgcgatc
cgcaacgtcggcgaggcggcggtcaaggacatcatcgccgaacgcggcaccgaccgcggc
cgatacgtcaacttcatggacttcatccgccgcgtgccgctgaccgcgctgaaccggcgc
ctggtcgaatcgctgatcaaggccggcgcgttcgactccatcgacccgaaccggcgcgcg
ctgttcaccgtgcacgaggccgccatcgactcggtcgtcggtctgaagcgcaagcaggcc
gagggccagttcgacctgttcgccgacacggaggacgggggagcggaggcgatgggcgac
gcccaggtcaacgtgcccgacatcgaggaatgggacaagaaaaccaagctcaacttcgaa
cgcgagatgctgggactgtacgtgtccgaccatccgctgagcggcatgcaggccgtgctg
gccggtctgcgcgagatgtcgatcgcgcatctgatcgaccgggcgaagaccatgggcgat
ggccagcaggtcacgttggccggcctgatcaccggcgtggaccggcgtgtgtccaagaag
ggcaatccgtgggccatcgtcaccatcgaggacatggaaagctccatccagtgcatgttc
ttcggcaaggtgtacgagaccgcggcggccgaactggcgatcgaccaggtggtgcagatc
cgtgggcaagtcgaggtgcgcgacgagaccgtgagcatgcgcgccacggaaatgcaggtg
ccgacgctggaggccgccgacgagcgcccgctgatgctcaccctgccgcaggtggcgctt
gggcgcgacaatgtgcagcggctggcgcaggtgctcaacgcgcatcccggctattgcgag
gtcaagctcgccgtcgtggacgagcagggcaacgcgcaggtgctgaccttcggcgaccgg
ttccgcgtcaagcgggatacgtcgttgttcgccgagatcaagatcctgttcgggcccagc
tgcctgcccgtcgcctga
DBGET
integrated database retrieval system
