Bifidobacterium scardovii: BBSC_2061
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Entry
BBSC_2061 CDS
T03975
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bsca
Bifidobacterium scardovii
Pathway
bsca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBSC_2061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsca03021
]
BBSC_2061
03400 DNA repair and recombination proteins [BR:
bsca03400
]
BBSC_2061
Enzymes [BR:
bsca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBSC_2061
Transcription machinery [BR:
bsca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBSC_2061
DNA repair and recombination proteins [BR:
bsca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBSC_2061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pentapeptide
SF-assemblin
Motif
Other DBs
NCBI-ProteinID:
BAQ32141
LinkDB
All DBs
Position
complement(2478407..2482429)
Genome browser
AA seq
1340 aa
AA seq
DB search
MLDVNAFDKLRIGLATAEDIRNWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIDLAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGHMAKRRDNEIEERAKKVEAD
LHELEEAGEASGSAKAKLRNSAEREMAAIRQRYDDQIQRLNAVFDRFKNLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIQKRLQDFDLEAAAKQLREEIDTGSGQRKARALKRLKVV
NAFLTTGNKPEAMVLTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRLID
LKAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDMNYAQNMKSAKRMVDRG
DTEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLFWLSTISDGAKGQG
RIFSSLAETQMALDLHEIDMQAKVLIRLPKDFVLPTGWEPGEVKVVDPEPGSPDVAREER
FTDGTVLFATSMGRILFNEALPTDYPFVSEQAKKGVLSRIVNDISTRYSTAQVAATLDAL
KDLGFTKAPWSGVTFAFSDVTEPPARATLVAESEAQVSKINQQYDIGFFTEEERRQAIID
EWTKCTKKVSDAVEAHFDPKNNLSIIVQSGARGNMTQINQIAGIRGLVNNPKGEVIPRPV
ESNYRQGLSVLEYFISEHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LPMKVADRDENGNLTLVKAADGGPYSRLLSADVIDPADGETVLYKRGDALSMDVLRDLVA
HGVEEVKARSVLTCDSKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPIAEFSGVIKTDAEADHVYQMTLTPDDT
TVEPIVYTVNRRAPLLVKNGDHVDVGTKLTEGSVDPKKILRILGPRAAQVNIVNEVHTVY
REQGVDIHDKHIEVIVRQMLRRITVIDSGDTSLLPGELVDQARFKEANKEAVQNGGKPAA
GRPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKVDDLKGLKENVIIGKLIPAGT
GLARYRNAVVEPDKAIRDTIYPNFGLGGGDDASADFSDADLSDVDFSNIDFGDLKLGDDF
NPDDFLDDQGGQDALGGDTL
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggattggcctggccaccgccgaggatatt
cgcaactggagccacggcgaggtcaagaagcccgaaaccatcaactaccgtaccctcaag
cccgagaaggacggtctgttcggcgagcagatcttcggaccgacccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgagcgatgcggtgtg
gaggtcaccaagtcgcgcgtgcgccgcgagcgcatgggccacatcgacttggccgccccc
gtcacccacatctggttcttcaagggcgtgccgagccgcctcggctacctgctcgacatc
gcgccgaaggacctggagaaggtcatctacttcgcggcctacatggtcaccaaggtcgac
gaggaacagcgccatcaggatctgcccgacctgcaggacgagttcgacaccgagatcggc
cacatggccaagcgccgcgacaacgagatcgaggagcgcgccaagaaggtcgaagccgat
ctgcacgagctggaggaggccggcgaggccagcggctccgccaaggcgaagctgcgcaac
agcgccgaacgcgagatggcggccatccgccagcgctacgacgaccagatccagcgcctg
aacgccgtgttcgaccgcttcaagaacctgaagcccggcgacatggaaggcgacgtggac
ctgtggcgcgagatggaggaccgctacggcgattacttcgagggctgcatgggcgctgag
gcgatccagaagcgcctgcaggacttcgacctcgaggccgcggccaagcagctgcgcgag
gagatcgacaccggttccggccagcgcaaggcccgcgcgctcaagcgcctgaaggtcgtc
aacgccttcctgaccaccggcaacaagcctgaggccatggtgctcaccgtgatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggcggccgcttcgctacctccgac
ctcaacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgcagcgtctgatcgac
ctcaaggcccccgagatcatgctcaacaacgagaagcgcatgctgcaggaggccgtcgac
tcgctgttcgacaacggccgccgcggccgcccggtcaccggcgcctcgaaccgcccgctc
aagtccctgtccgacatgctcaagggcaagcagggccgtttccgccagaacctgctcggc
aagcgcgtcgactactcgggccgttccgtgatcgtcgtcggcccgtcgctgcgcatgcac
cagtgcggcctgcccaagccgatggccctcgagctgttcaagcccttcgtcatcaagcgc
ctggtcgacatgaactacgcgcagaacatgaagagcgcgaagcgcatggtcgaccgcggc
gacaccgaggtgtggggtgtgctcgaggaggtcatctccgagcatcccgtgctgctcaac
cgcgcgcctacgctgcaccgtctgggcatccaggccttcgagccgatcctggtcgaaggc
aaggccatccacctgccgccgctcgcctgcgccgcgttcaacgccgacttcgacggcgac
caaatggccgtccacctgccgctgagcgccgaggcgcaggccgaggcacgttcgctgatg
ctcgcctccgacaacatcctcaagcccgccgacggccacaccgtgaccatgccttcgcag
gacatgatcctgggcctgttctggctgtccaccatcagcgatggcgccaagggccagggc
cgcatcttctcctcgctggccgagacgcagatggcgctcgacctgcacgagatcgacatg
caggccaaggtgctgatccgcctgccgaaggacttcgtgctgccgaccggctgggagccg
ggcgaggtcaaggtcgtcgacccggagccgggcagcccggacgtggcgcgcgaggaacgc
ttcacggacggcaccgtcctgttcgccacctcgatgggccgcatcctgtttaacgaggcg
ctgccgaccgattacccgttcgtcagcgagcaggccaagaagggcgtcctgtcccgcatc
gtcaacgacatctccacccgctactcgaccgcccaggtggcggcgacgctggatgcgctc
aaggaccttggcttcaccaaggccccgtggtcgggcgtcaccttcgcgttctccgacgtg
accgagccgccggcccgcgccacgctggtcgccgagtccgaggcgcaggtcagcaagatc
aaccagcagtacgacatcggcttcttcacggaggaggagcgtcgccaggcgatcatcgac
gagtggaccaagtgcaccaagaaggtgtccgacgcggtcgaggcccacttcgatccgaag
aacaacctgtcgatcatcgtccagtccggtgcgcgaggcaacatgacccagatcaaccag
atcgcgggcatccgtggcctagtgaacaacccgaagggcgaggtcatcccccgaccggtc
gagtcgaactaccgtcagggcctgtccgtcctcgagtacttcatctccgagcacggcgcg
cgcaagggtctggccgataccgcgcttcgtaccgcggagtcgggctacctgacccgtcgt
ctggtcgacgtctcgcaggacgtgatcgtgcgcgaggaggactgcggcaccaagcgcggc
ctgccgatgaaggtcgccgaccgcgacgagaacggcaacctgacgctcgtcaaggccgcc
gacggcggtccgtactcgcgtctgctgtccgccgacgtgatcgacccggccgacggcgag
accgtgctgtacaagcgcggcgacgccctgtcgatggacgtgctccgtgatctcgtggcg
cacggcgtcgaagaggtcaaggcccgctccgtgctcacctgcgattccaagcgcggcgtg
tgcgcgaagtgttacggctggtcgctggccaccaacaagctcgtcgacgtcggcgaggcc
gtcggcatcgtcgcggcccagtccatcggcgagcccggcacccagctgacgctgcgttcc
ttccactccggcggcgtcgcggcggcttccgatatcacgcagggtcttccccgtgtcacc
gagcttttcgaagcccgtaccccgaagggcgaagcgcccatcgccgagttctccggcgtg
atcaagaccgatgcggaagccgaccacgtctaccagatgacgctgaccccggacgacacg
accgtcgagccgatcgtctacaccgtgaaccgccgcgctccgctgctggtcaagaatggc
gatcacgttgacgtcggcacgaagctgaccgaaggttccgtggatcccaagaagatcctg
cgcatcctcggcccgcgcgccgcccaggtcaacatcgtgaacgaagtgcacaccgtgtac
cgtgagcagggcgtggacatccacgacaagcacatcgaggtcatcgtgcgccagatgctg
cgccgcatcaccgtcatcgactccggcgacacgtcgctgctgccgggcgagctggtcgac
caggcgcgcttcaaggaagcgaacaaggaggccgtgcagaacggcggcaagccggccgcc
ggccgccccgagctcatgggcatcaccaaggcctcgctggccaccgactcgtggctgtcc
gccgcctccttccaggagacgacgcgcgtgctcaccgaagccgccctgagccagaaggtc
gacgacctcaagggcctcaaggagaacgtgatcatcggcaagctgatcccggccggcacc
ggcctcgcccggtaccgcaacgccgtggtcgagcccgacaaggcgattcgcgacaccatc
tacccgaacttcggcttgggtggcggcgacgacgccagcgcggacttctccgatgccgac
ctgtccgatgtggacttctccaacatcgacttcggcgacctgaagctcggcgacgacttc
aacccggacgacttcctcgacgatcagggaggccaggacgcgctcggcggcgacacgctg
tga
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integrated database retrieval system
