Bifidobacterium scardovii: BBSC_2299
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Entry
BBSC_2299 CDS
T03975
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bsca
Bifidobacterium scardovii
Brite
KEGG Orthology (KO) [BR:
bsca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsca03032
]
BBSC_2299
03400 DNA repair and recombination proteins [BR:
bsca03400
]
BBSC_2299
Enzymes [BR:
bsca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BBSC_2299
DNA replication proteins [BR:
bsca03032
]
Prokaryotic type
DNA Topoisomerases
BBSC_2299
DNA repair and recombination proteins [BR:
bsca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBSC_2299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAQ32379
LinkDB
All DBs
Position
complement(2778659..2781634)
Genome browser
AA seq
991 aa
AA seq
DB search
MATGSKLVIVESPTKAKKIGGYLGDGYTVMASVGHIRDLAQPSQVPAADKAKFGKFGVDV
EDGFKPYYIVDGDKKRTVSELKSALKGADELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITPEAIKASLGNTRDVDGDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRASYWDVTATLAAPDAEGQRAEFDARMVSLGGKRLAVSKDF
GADGKLTPAGFADNVCQLDESSANAIAEVLGDAPFTVVSMESKPYRRRPLPPFTTSTLQQ
TAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAARGAVEYHFGKAFLSDA
PKQYATKTAGAQEAHECIRPAGARFRDPAELAAKVPPDQLKLYTLIWQRTLASQMSDATG
STATVRLSAPVGERGEAIFQASGTVIEFPGFMKATGEGRRTAARPAETAVAGGAAAGKGS
DEGAGKGAKNSEENASLPPMSTGQRVEASNVSADGHETQPPARYTEASLVKTLEAKEIGR
PSTYASIISTIIDRGYVYERGRALIPSWLAFSVIKLLETKFPKYVDYEFTADMENGLDQI
AHGKETGREWLTRFYFGSGTGAAQSSDEAHAGLQQKVAQLGEIDARAINTIDIGDGLHVR
VGRYGPYLEDMEHLDAEGNPKRASLPDTLAPDELTVEVGRDLIDNHSGGPRELGVDPVSG
GTVEVRNGRFGPYVALVPAVSGDDADAGAAGGSSGASTAKRGSKKAAAPKPKMASLFKTM
SPESLTLDDALRLLSLPRLVGSYEETNADTGEVSEAKVEANNGRYGPYLTKTAADGKTET
RSLGSEDEIFTVDIDKAKELFAQPKYGRGRGRGAAKPPLRELGPDPENGKPVTIKDGFYG
AYITDGETNRTLPKQYAPETIEPAEAFRLLAEKRAAGPAKRRGRKTAATAKKTTKAAKST
SAKTPSKTSASKSSTAKKTTTRKTAAKKTAE
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccggcagcaagctcgtcatcgtggagtctcccaccaaggccaagaagatcggc
gggtatctcggagatgggtacaccgtcatggcatcggtcggtcacatccgcgatctggcc
cagcccagccaggtgccggccgcggacaaggccaagttcggcaagttcggcgtggacgtc
gaggacgggttcaagccctactacatcgtcgacggcgacaagaagcgcaccgtctccgaa
ctcaaatccgcgctgaagggcgccgacgagctgtacctcgccactgatgaggatcgcgag
ggagaggccatcgcgtggcacctcgtgcagacgctcaagccgaaggttccggtcaagcgc
atggtgttccacgagatcacgcccgaggcgatcaaggcgtcgctgggcaacacgcgcgat
gtcgacggagacatggtcgacgcgcaggagacgcgccgcatcctcgaccgtctctacggc
tacgagctgtcgccggtgctgtggcgcaaggtcggcccgggcctgtcggccggccgcgtg
cagtcggtggcgacccgtctgatcgtcgagcgcgagcgcgagcgcatggccttcgtgcgc
gcctcctactgggatgtgactgccacgctcgccgcgcccgatgcggaaggccagcgggcc
gaattcgacgcgcgcatggtatcgctgggcggcaagcgtctcgcggtatccaaggacttc
ggcgccgacggcaagctgacgccggccggtttcgcggacaatgtctgccagctggacgag
tcgtcggcgaatgcgatcgccgaggtgctcggcgacgcgccgttcaccgtggtctccatg
gaatcgaagccgtaccgccgccgcccgctgccgccgttcaccacgtcgacgctgcagcag
accgccggcaaccggctgtcgatgagttcccgccagaccatgcgcgccgcgcaggggctg
tacgagaacggttacatcacgtatatgcgtaccgactcggtcacgctgtcgcaggaggcg
atcgcggccgcgcgcggcgccgtcgaatatcacttcggcaaggcgttcctgtccgacgcg
cccaagcagtacgcgacgaagaccgccggcgcgcaggaggcccacgagtgcatccgcccg
gccggcgcgcgcttccgcgacccggccgaactggcggccaaggtgccgccggaccagctc
aagctgtacacgctgatctggcagcgcacgctcgcctcgcagatgtccgacgccaccggc
tccaccgcgaccgtgcgcctgtcggcgcccgtgggggagcgcggcgaggcgatcttccag
gcctccggcacggtcatcgagttccccggcttcatgaaggccaccggcgaggggcggcgt
acggccgcccggcccgccgagacggcggttgccggcggcgcggccgcgggcaagggctcc
gatgaaggtgcgggcaagggcgcgaagaacagcgaggagaacgcctcgctgccgccgatg
agcacggggcagcgggtcgaggcctccaacgtctccgccgacgggcacgagacgcagccc
ccggcgcgctacaccgaggcgtcgctggtcaagacgctggaggccaaggagatcggccgc
ccgtcgacctatgcgagcatcatctcgacgatcatcgaccgtggctacgtgtacgagcgc
ggccgcgcgctgatcccctcgtggctggccttctccgtgatcaagctgctggagaccaag
ttccccaagtacgtcgactacgagttcaccgccgacatggaaaacggcctcgaccagatc
gcgcacggcaaggagaccggccgggaatggctgacccgcttctacttcgggtccggcacc
ggcgcggcgcagtcctccgacgaggcgcatgccggcctgcagcagaaggtcgcgcagctc
ggcgagatcgatgcgcgcgcgatcaacacgatcgacatcggcgacgggctgcatgtgcgc
gtcggccggtatggcccgtatctggaggacatggagcatctggacgcggaaggcaacccg
aagcgcgcgtccctgcccgacaccttggccccggacgagctgaccgtcgaggtcggccgc
gacctgatcgacaaccattcgggcggtccgcgcgagctcggcgtcgatccggtcagcggc
ggcaccgtcgaagtgcgcaacggccggttcggtccgtatgtggcgctggtcccggcggtt
tcgggagacgatgccgatgccggtgcggcgggaggttcctcgggagcttccacggccaag
cgcggctcgaagaaggccgccgcgccgaagcccaagatggcctcgctgttcaagacgatg
agccccgagtcgctgacgctggacgacgcgctgcgcctgctcagcctgccgcgcctcgtc
ggatcgtatgaggagacgaacgccgacaccggcgaagtaagcgaagccaaggtcgaggcg
aacaacggccggtatggcccgtacctgaccaagaccgccgccgacggcaagaccgagacg
cggtcgctcgggtcggaggacgagatcttcaccgtcgacatcgacaaggccaaggagctg
ttcgcccagccgaagtacggccgcggccgcggacgcggcgccgccaagccgccgctgcgc
gagctcgggccggacccggagaacggcaagccggtgaccatcaaggacgggttctacggc
gcgtacatcaccgatggcgagaccaaccggacgctgcccaagcagtatgcgcccgagacg
atcgagcccgcggaggccttccgcctgcttgcggagaagcgcgcggccggcccggccaag
cgccgcggccgcaagaccgccgccacggcgaagaagaccacgaaggccgcgaagtcgact
tccgcgaagacgccgtccaagacctcggcgtcgaagtcttccacggcgaagaagaccacc
acgcgcaagacggccgccaagaagaccgccgagtag
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