Bartonella schoenbuchensis: AAJP84_01525
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Entry
AAJP84_01525 CDS
T10346
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsch Bartonella schoenbuchensis
Pathway
bsch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAJP84_01525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsch03019
]
AAJP84_01525
Enzymes [BR:
bsch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAJP84_01525
Messenger RNA biogenesis [BR:
bsch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAJP84_01525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XAM20042
LinkDB
All DBs
Position
complement(335709..337073)
Genome browser
AA seq
454 aa
AA seq
DB search
MNIKENAFIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAF
GLPVLSQILALGDKRYPKTARALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSRF
AQIKRMKTGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAKL
LHEKRQTALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCVPTSEKKSVL
NKFLTDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKVFREGSV
GILVATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQV
RLRAVERVIRMKLTREDIPPQIAALPEKSLIPENDKKHCFKKSQCQKQTFDHIDQIKQSY
IKNSSSKNKRCKKAKTTTKRAKSFRFRKSIKQVA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtgaatataaaagaaaatgcctttataaaattaggtatacctacacttttaactgaaaac
ctatttattgctggtataaacaaacctaagcctattcaaaaacaggctattccagtaatg
ctaaaaaagcgcgatattttaggtattgcacaaaccggttctggaaaaacattagcattt
ggattacctgttttgagccaaattttggctttaggtgacaaaagatatcctaaaactgca
cgagctttgatcttagttccaactcgtgaacttgcagttcagattgaagaatcaattcgt
atggttgcaaaagggtctcacctttcaacatgtttaattttagggggggtatctcgattt
gcgcaaatcaaacgtatgaaaacaggtgtggatgttttaattgcaacaccagggcgttta
atggaccttgttagtgaaaaatgcattgatctttctcagtctcgttttttggttttagat
gaagctgatcgtatgttagatatgggctttattcgtgatgtacaacgcattgcaaaactt
ttgcatgagaagcgtcaaacagcgcttttttcagcgacaatgccacgggaaatagttaca
cttgcaaagaatttgcttaatgaaccagtaaaaatagaaattgttcctcaaggaactgtt
gctacgaaaattactcaaaaattatattgtgttcctacaagtgaaaaaaagagcgttttg
aataaatttttaacagatccggctttagcttcggttattatttttacgcgaactaaacat
ggtgctgatgctgttgcacgcagtttgacgaaggcgggatattctgttgcagcaattcat
ggaaataaatcgcatgctgcacgacagcgtgccttgaaagtttttcgtgaagggtcggta
gggattcttgttgcaactgatattgctgcacgtggtattgatgtgcctggagtcagccac
gttattaattatgatttaccggatgaagctgaaaattatgtgcatcgtattggccgtacg
ggacgaaatgatacgtctggcaacgctattacactttttgatgaaaaggtagaacaagta
cgtttacgtgctgtagaacgtgttattcgaatgaaattgacgcgcgaagatattccacca
caaattgcagcacttccagagaaatctcttataccagaaaatgataagaaacattgtttt
aagaaatctcagtgtcagaagcagacttttgatcatatagatcaaattaaacaatcatat
atcaaaaattcttcatctaaaaataaaagatgtaagaaagcaaaaaccacaacaaaacgt
gctaaatcatttcgttttcgtaagtcaataaagcaggtggcttaa
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