Blastococcus saxobsidens: BLASA_1548
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Entry
BLASA_1548 CDS
T01752
Name
(GenBank) Ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BLASA_1548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsd03019
]
BLASA_1548
03009 Ribosome biogenesis [BR:
bsd03009
]
BLASA_1548
Enzymes [BR:
bsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BLASA_1548
Messenger RNA biogenesis [BR:
bsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BLASA_1548
Ribosome biogenesis [BR:
bsd03009
]
Prokaryotic type
rRNA processing factors
BLASA_1548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
NT5C
Motif
Other DBs
NCBI-ProteinID:
CCG02476
UniProt:
H6RLF0
LinkDB
All DBs
Position
1488899..1492099
Genome browser
AA seq
1066 aa
AA seq
DB search
MADTDHTPTHDETQGDDVPAGTPQAAENEAGGIPALPEDGAPAEEEPDAAAEAGTPPGSP
AEPESPAEPAADVESDEPEHDSVRSPFGAQFSSPEPTAVVARPRRRATRPAGAAAPDSVE
AVAPAPAAPAPAFISFMAPPADVPPAPRRRSRRPAESPDPDTLDESAETPGSAGDDAVEE
APSRSRRNRSRRRPAEDQQEPAEATVVEDEDAEERDASDESGEDSDEGGSSASRRRRRGR
RGRGRGRSGEDSSDSDDDNGNERPGADEDTDTDEDTDTSDGATDTEDDGDDEGSTGAGTR
RRRRRRRRSSGSGAEDSADESDDDRPERAGRNGRSTSDDDVRGIAGSTRLEAKRQRRRDG
RDTGRRRTPILTESEFLARREAVDRKMVIRQRGERTQIAVLEDDVLVEHYVTQATATSFA
GNVYLGRVQNVLPSMEAAFVDIGKGRNAVVYAGEVNWDAAGLSGKQRSIEQAFKSGDKIL
VQVTKDPIGHKGARLTQQVNLPGRFLVYVPGGSMTGISRKLPDTERQRLKDILKRIVPED
AGVIIRTAAEGASEEELTRDVNRLTAQWEVIQKKAESTSNAPALLYGEPDLAIRVIRDVF
NEDFKELVVQGDDAWDTVEAYVAHVSPELTERLTRYTGEGDVFRDLRVDEQLTKALDRKV
WLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNMEAAEEIVRQLRLRDIGGI
IVIDFIDMVLESNRDLVLRRLTECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEVFSE
SCEHCRGRGILVHLDPVDEKRRGGGGGGGKDSGAKDSGGRDSVAKDSGGRDSGAKDSGAK
DSGGKDSGRNRGDGSKDTSDKETAEDGAEAGSAETPTGDGEASESGRGGRRNRGRRNRGQ
SGEERAAEDAAVLAGAADPGDEAGTGGPATEEAAPATQQPADNEIHGEPVVPPVRRRSGS
VATVEPLPETVPAPPAPAKTQAEDVLPAGEVGAVEVPEQNQVPITPATTTADVLPGAVAH
TADADAGAESDGPRAQDGFTADGEPPAATTRPRRRRAASRPAGPPA
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacaccgaccacaccccgacgcacgacgagacccagggcgacgacgtccccgcg
ggcacaccgcaggccgccgagaacgaggccggcggcatcccggcgctccccgaggacgga
gcaccggccgaggaggagccggacgccgcggcggaggccggcaccccgcccggatcgccc
gccgagccggagtcgcccgccgagccggccgcggacgtcgagtccgacgagccggagcac
gactcggtgcggtccccgttcggggcgcagttcagctcgccggaaccgaccgccgtcgtc
gcccgtccccgccgccgggccacccgcccggcgggcgcggccgccccggactcggtcgag
gcggtcgcccccgcacccgcggcgccggccccggccttcatcagcttcatggccccgccc
gccgacgtgccgccggccccgcgccggcgcagtcgccggccggcggagtcacccgatccc
gacacgctcgacgagtcggccgagacccccggcagcgccggcgacgacgctgtcgaggag
gcgccttcccgctcgcgccggaaccgctcgcgccgccgtccggccgaggaccagcaggag
cccgccgaggcgaccgtcgtcgaggacgaggacgccgaggagcgcgacgcctcggacgag
tccggcgaggactccgacgagggcggctcgtcggccagccggcggcggcgtcgtggccgt
cgcgggcgcggccgtgggcgcagcggcgaggactcctcggactccgacgacgacaacggg
aacgagcgccccggcgccgacgaggacaccgacaccgacgaggacaccgacacctccgac
ggcgccacggacaccgaggacgacggcgacgacgagggatcgaccggcgccggcacccgc
cgccgccggcgccgtcgccggcgcagcagcggctcgggcgccgaggactccgccgacgag
agcgacgacgaccgcccggagcgggccggtcgcaacggccggagcaccagcgacgacgac
gtccgcgggatcgccggctccacgcggctcgaggccaagcgtcagcgccgccgggacggc
cgggacaccgggcgtcggcgcacgccgatcctgaccgagtcggagttcctcgcccgccgc
gaggcggtggaccggaagatggtcatccgccagcgcggcgagcgcacccagatcgccgtc
ctcgaggacgacgtcctggtcgagcactacgtcacccaggcgacggcgacgtcgttcgcc
gggaacgtctacctcggccgcgtgcagaacgtgctccccagcatggaggcggccttcgtc
gacatcggcaaggggcgcaacgccgtcgtctacgccggtgaggtcaactgggacgccgcg
ggtctgtcgggcaagcagcgctccatcgaacaggcgttcaagtccggcgacaagatcctg
gtgcaggtcaccaaggacccgatcgggcacaagggcgcccggctgacccagcaggtcaac
ctgccgggccggttcctggtctacgtgcccggtggctcgatgaccggcatcagccgcaag
ctgcccgacaccgagcggcagcggctcaaggacatcctcaagcgcatcgtgcccgaggac
gccggcgtgatcatccggaccgccgcggagggcgcctccgaggaggagctcacccgcgac
gtcaaccggctgaccgcgcagtgggaggtcatccagaagaaggcggagtcgacgtccaac
gccccggcgctgctctacggcgagcccgacctcgccatccgggtcatccgggacgtcttc
aacgaggacttcaaggagctggtggtccagggcgacgacgcctgggacaccgtcgaggcc
tacgtcgcgcacgtctccccggagctgaccgagcggctcacccgctacaccggggagggc
gacgtcttccgcgacctgcgggtggacgagcagctgaccaaggcgctcgaccgcaaggtg
tggctgccctcgggtggatcgctggtgatcgaccgcaccgaggcgatgaccgtcgtcgac
gtgaacaccggcaagttcaccggctccgggggcaacctcgagcagaccgtcacgcgcaac
aacatggaggcggccgaggagatcgtccgccagctccggctgcgcgacatcggcggcatc
atcgtcatcgacttcatcgacatggtgctggagagcaaccgggacctcgtcctgcgccgg
ctcaccgagtgcctgggccgcgaccgcaccaagcaccaggtcgcggaggtcacctcgctc
ggcctggtgcagatgacccgcaagcgggtcggccagggcctgctggaggtcttctccgag
tcctgcgagcactgccgtggccgcgggatcctcgtgcacctcgacccggtggacgagaag
cgccgcggcggcggcggtggcggcggcaaggactccggggccaaggactccggcggcagg
gactccgtggccaaggactccggcggcagggactccggggccaaggactccggggccaag
gactccggcggcaaggactccggccgcaaccgcggcgacggcagcaaggacacgtccgac
aaggagaccgccgaggacggggccgaggccggttcggccgagaccccgaccggtgacggc
gaggcctccgagagcggccgcggcggccgtcgcaaccggggccgccggaaccgcggccag
tcgggcgaggagcgcgcggccgaggacgccgccgtgctcgcgggcgcggctgatcccggg
gacgaggccggcaccggcggacccgccaccgaggaggcggcgcccgcgacccagcaaccg
gccgacaacgagatccacggggagccggtcgtgccgcccgtgcgccgtcgcagcgggtcg
gtcgcgacggtcgagccgctgcccgagaccgtgccggcgccgccggcgccggcgaagacc
caggccgaggacgtgctgccggccggcgaggtcggtgccgtcgaggtaccggagcagaac
caggtcccgattaccccggcgaccacgactgccgacgtcctccccggcgcggtggctcac
acggccgacgccgacgccggtgccgagtccgacggtccgcgcgcccaggacggcttcacg
gccgacggcgagccgccggccgcgaccacccggccgcgccgtcgccgggccgccagccgc
ccggcaggtccgcccgcgtaa
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