Blastococcus saxobsidens: BLASA_3301
Help
Entry
BLASA_3301 CDS
T01752
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BLASA_3301 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsd03021
]
BLASA_3301 (rpoD)
Transcription machinery [BR:
bsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BLASA_3301 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ArgZ-like_C_1st
HTH_20
Motif
Other DBs
NCBI-ProteinID:
CCG04169
UniProt:
H6RR89
LinkDB
All DBs
Position
3173024..3174376
Genome browser
AA seq
450 aa
AA seq
DB search
MPADQPAPEAAVASTPRARTAAAGTRAGTEKTAAEPAAGRKKAPAKTPATKTPAKGRAKP
TITPSPGAGEGTVLTAVATEDSAVAVVDAGSEGLKLDETVVTGKDGVEVAAAEEETAEGG
TDFEWDDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVDLAKRIEAGLY
GSERLRQVEEEGQKISPQMRRDLNWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFL
DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINK
LGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTIGDEGDSQLGDF
IEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGV
TRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgccgatcagccagcaccggaagcagccgtagcgagcaccccgcgcgccaggacg
gccgcagccgggacccgtgccggcaccgagaagacggccgctgagccggccgccggccgg
aagaaggcgccggccaagaccccggccaccaagacaccggccaaggggcgcgccaagccg
acgatcaccccgtcgccgggtgccggtgagggcacggtcctcaccgccgtggccaccgag
gactccgcggtcgccgtggtcgacgccggctcggagggcctcaagctcgacgagacggtc
gtgaccggcaaggacggcgtcgaggtcgccgccgccgaggaggagaccgccgagggcggc
accgacttcgagtgggacgacgaggaggagtccgaggcgctgcggcaggcccgcaaggac
gccgagctcaccgcgtcggcggactccgtccgcgcctacctcaagcagatcggcaaggtc
gccctcctcaacgccgaggaggaggtcgacctcgccaagcgcatcgaggccgggctctac
ggctccgagcggctgcgccaggtcgaggaggagggccagaagatctcgccgcagatgcgc
cgggacctcaactggatcgtccgcgacggcgagcgcgccaagaaccacctgctcgaggcc
aacctgcgcctcgtggtctccctcgccaagcgctacaccggccgcggcatggcattcctg
gacctcatccaggagggcaacctcgggctgatccgcgcggtcgagaagttcgactacacc
aagggctacaagttctccacctacgcgacgtggtggatccggcaggccatcacccgcgcc
atggccgaccaggcccgcaccatccgcatcccggtgcacatggtcgaggtcatcaacaag
ctcggccgcatccagcgcgagctgctccaggacctgggccgcgagcccaccccggaggag
ctggccaaggagatggacatcaccccggacaaggtgctggagatccagcagtacgcccgg
gagccgatcagcctcgaccagaccatcggcgacgagggcgacagccagctcggtgacttc
atcgaggactccgaggcggtggtggccgtcgacgcggtcagcttcacgctgatgcaggac
cagctgaccagcgtgctgcagaccctctccgagcgggaggccggcgtcgtccggctgcgg
ttcgggctcaccgacggccagccgcgcacgctggacgagatcggccaggtctacggggtc
acccgtgagcggatccggcagatcgagtccaagacgatgtccaagctgcgccaccccagc
cgttcccaggtgctgcgcgactacctggactga
DBGET
integrated database retrieval system
