Blastococcus saxobsidens: BLASA_3986
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Entry
BLASA_3986 CDS
T01752
Name
(GenBank) conserved protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bsd
Blastococcus saxobsidens
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsd03016
]
BLASA_3986
Enzymes [BR:
bsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BLASA_3986
Transfer RNA biogenesis [BR:
bsd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BLASA_3986
Prokaryotic type
tRNA splicing ligases
BLASA_3986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCG04814
UniProt:
H6RJ69
LinkDB
All DBs
Position
3855428..3856615
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AA seq
395 aa
AA seq
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MERLSDKLLNWASILDDETLKQAERTASLDIVDPHVALMPDAHLGKGATVGSVLPTRAAI
IPAAVGVDIGCGMIAVRTPWSADEVRARGPLAPLRGDIERAVPLSAGRYNKKLTETARRR
VVELEATAEGLGDRVLHSVTTTAPNWAMQLGSLGSGNHFIELTADEQDRVWLFLHSGSRG
VGNKIAQKHVAIAQEQARRDGLDLPDRDLAWLDEGTPEFDRYIAELRWAQHFALLNREEM
MDRVADCLARHMRADGTPELERINAHHNFTQHERHFGQDLWVSRKGAIQAQKGQAGLIPG
SMGTASYVVSGLGNPESLESSPHGAGRVFSRTRARKTFTRAQLEESMRGIEWRHSDAFLD
EIPAAYKDVDQVMADAADLVEVRHTLRQLVNVKGD
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
gtggaaagactgtccgacaaactcctgaactgggccagcatcctcgacgacgagacgctg
aagcaggccgagcgcaccgcctccctcgacatcgtcgacccgcacgtcgcgctcatgccc
gacgcacacctgggcaagggcgcgaccgtcggctcggtgctaccgacgcgggcggcgatc
atcccggcggcggtcggcgtcgacatcggctgcggcatgatcgccgtccgcaccccgtgg
tcggcggacgaggtgcgggcccgcggcccgctcgcgccgctgcgcggcgacatcgagcgc
gccgtcccgctgtcggcggggcgctacaacaagaagctgaccgagaccgcccgccgccgg
gtcgtcgagctcgaggccacggccgaggggctcggcgaccgcgtcctgcactcggtgacg
acgacggcgccgaactgggcgatgcagctgggcagcctaggctcgggcaaccacttcatc
gaactgaccgccgacgaacaggaccgcgtctggctcttcctgcactccggcagccgcggg
gtgggcaacaagatcgcccagaagcacgtcgctatcgcccaggagcaggcccgccgggac
gggctcgacctgcccgaccgcgacctcgcctggctcgacgagggcaccccggagttcgac
cgatacatcgccgagctgcggtgggcgcagcacttcgcgctgctcaaccgcgaggagatg
atggaccgggtcgccgactgcctagcccggcacatgcgggccgacggcacgccggagctc
gagcggatcaacgcccaccacaacttcacccagcacgagcggcacttcggccaggacctc
tgggtgtcccgcaagggcgccatccaggcgcagaaggggcaggcgggcctcatccccggc
tcgatggggacggcgagctacgtggtcagcgggctcggcaacccggagtcgctggagtcc
tcgccgcacggcgccgggcgggtgttctcgcggacccgggcgaggaagacgttcacccgc
gcccagctggaggagtcgatgcgcggcatcgagtggcggcacagcgacgccttcctcgac
gagatccccgcggcgtacaaggacgtggaccaggtcatggccgacgccgcggatctggtg
gaggtccggcacacgctgcgccagctggtcaacgtgaagggcgactga
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