Blastococcus saxobsidens: BLASA_4582
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Entry
BLASA_4582 CDS
T01752
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bsd
Blastococcus saxobsidens
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsd03019
]
BLASA_4582 (hrpA)
Enzymes [BR:
bsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BLASA_4582 (hrpA)
Messenger RNA biogenesis [BR:
bsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BLASA_4582 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
SLFN-g3_helicase
AAA_16
ABC_tran
SRP54
Motif
Other DBs
NCBI-ProteinID:
CCG05385
UniProt:
H6RQL7
LinkDB
All DBs
Position
complement(4407348..4411319)
Genome browser
AA seq
1323 aa
AA seq
DB search
MSAPPEPLRARDDLRERLTGLTLADEHRLRRRLDGLRRTRDPQARERQRERLAADVGAAE
ARIARRRAAVPEISYPQELPVSARRDDIAAALRDAQVVVVAGETGSGKTTQLPKIALELG
RGVRGRIGHTQPRRIAARSVAERIAEELETPLGEAVGYKMRFNDQVSDSTLVKLMTDGVL
LAEIAHDRLLRQYDTIILDEAHERSLNIDFLLGYLAQLLPKRPDLKLVITSATIDVERVA
AHFSGAPVVAVSGRTYPVEVRYRPVVDPDDEDADPDRDQVSAILDAVDELVAEGPGDILV
FLAGEREIRDTQDALTERALPSTEIVPLYSRLSAADQHKVFAPHSGRRIVLSTNVAETSL
TVPGIRYVIDPGTARISRYSHRTKVQRLPIEPVSQASARQRSGRCGRLGPGIAVRLYTEA
DFESRPEFTDPEILRTNLASVLLQMAALDLGAVEDFPFVDPPDRRAIADGMALLEELHAL
DEHGRLTPTGRSLAALPLDPRMARMVVEANERGVLDEVLVIAAGLTIQDPRERPTEHQQA
ADQMHARFADENSDFLALLNLWRYLGEQQEALSGNQFRRTVKREFLHYLRIREWQDLHGQ
LRGTARRLGMTVGEPAAEPDEKGVHAALLAGLLSHVGLQMELGQGRRGGQEAQRDKRPSR
EYLGTRNTRFVIAPGTPLAKKPPRWVVAAELVETSRLFARTVARIDPETVEKLAEHLVKR
QHSEPRWDAKRGSVVATERVTLYGLPLVVGRRVQYGAIDPVVSRELFIRHALVHGEWTTH
HRFWTENQRAIERVAALEERARRRDIAVDDETLFELYDGRIPADVVSTRHFDRWWKRARH
EQPDLLTFTPEMLANAAVAAGVRPEDYPDEVPLTQGLTLPLSYAFSPGAPEDGVTVDVPL
GVLDTVVGATSGESLAFTVPGLREELVTALLRTLPKQLRRALVPIPDRVREVLPRIAPGE
SLLPALERELRRAAGVVIPPDAWQPGQVPDHLRATFRVLDDQQRPLATGKDLAALKAQVA
PQARASLARASSELERTGLTSWDVGTLPRTVEVRRGAHVVTAHPALVDEGATVGVRVVPT
EAEATRLSWRGTRRLLVLVAGSPAKQVVKGLGPGTRLALQFNPDGEIPDLVADCVDAAAD
ELIAAAGGPPRDPDAFAALVATAKQQLPPLTADTVRRVEAVLTQAREVAVAIGAAPARRV
PEAAVADLRRQMTGLLHRGFVAATGRRRLPDVVRYLRAMVHRLEKLPANAARDELWMQQV
AAVAAEYEQLRRQVPSTGAPDDPVTRVRWMVEELRVGLFAQIVGTPRPVSEQRIHKAIDA
LLM
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgcaccgccggaacccctccgggcgcgcgacgatctccgggagcgcctcaccggg
ctgaccctcgccgacgagcaccgcctccgccggcggctcgacggcctgcggcggacccgc
gatccgcaggcgcgggagcgccagcgcgagcgcctggctgccgacgtcggggccgcggag
gcccgcatcgcgcgccgccgcgccgccgtcccggagatcagctacccccaggagctgccg
gtcagcgcccggcgggacgacatcgccgccgcgctgcgcgacgcccaggtggtcgtcgtg
gccggcgagacggggtcgggcaagacgacgcagctgccgaagatcgccctcgagctcggt
cgcggtgtgcgcggtcgcatcgggcacacccagccgcgccggatcgccgcgcgcagcgtc
gccgaacggatcgccgaggagctggagaccccgctgggcgaggccgtcggctacaagatg
cgcttcaacgaccaggtctccgactcgacgctggtcaagctcatgaccgacggcgtgctg
ctggccgagatcgcgcacgaccgcctgctgcgccagtacgacacgatcatcctcgacgag
gcgcacgagcggagcctcaacatcgacttcctgctgggctacctcgcccagctgctgccg
aagcggcccgacctgaagctggtcatcacctcggcgacgatcgacgtggagcgggtggcc
gcacacttctcgggcgccccggtcgtggcggtgagcgggcggacgtacccggtcgaggtc
cgctaccgcccggtggtcgaccccgacgacgaggacgccgaccccgaccgcgaccaggtc
agcgcgatcctcgacgccgtcgacgagctggtcgccgaggggccgggcgacatcctggtg
ttcctcgccggtgagcgggagatccgcgacacccaggacgcgctcaccgagcgggcgctg
cccagcaccgagatcgtgccgctctactcccggttgtcggccgccgaccagcacaaggtc
ttcgccccgcacagcgggcgccggatcgtgctgtccaccaacgtcgccgagacctcgctc
accgtgccgggcatccggtacgtgatcgaccccggcaccgcccgcatctcccggtacagc
catcggaccaaggtccagcggctgccgatcgagccggtcagccaggcctcggcccggcag
cggtcgggccggtgcgggcggctgggcccgggcatcgccgtccgcctctacaccgaggcc
gacttcgagtcccgccccgagttcaccgatcccgagatcctgcgcacgaacctcgcctcg
gtgctgctgcagatggccgcgctggacctgggcgccgtcgaggacttcccgttcgtcgac
ccgcccgaccggcgggcgatcgccgacggcatggccctgctcgaggagctgcacgcgctc
gacgagcacggaaggctgacgccgaccggccgctcgctggccgccctgccgctggacccc
cggatggcgcgcatggtggtcgaggcgaacgaacgcggggtgctcgacgaggtcctcgtc
atcgccgccggcctcaccatccaggacccgcgcgagcggccgacggaacaccagcaggcc
gccgaccagatgcacgcgcggttcgccgacgagaactcggacttcctcgcgctgctcaac
ctctggcgctacctgggcgagcagcaggaggcgctgtccggcaaccagttccgccgcacg
gtgaagcgggagttcctgcactacctgcgcatccgcgagtggcaggacctgcacggccag
ctgcgtggcaccgcccggcgcctggggatgaccgtgggggaaccggcggccgagcccgac
gagaagggcgtccacgctgccctgctggccggcctgctcagccacgtcgggctgcagatg
gagcttggccaggggcggcggggcgggcaggaagcacagcgtgacaagcggccgagccgt
gagtacctgggcacccggaacacccgcttcgtgatcgcgcccggcaccccgctggcgaag
aagccgccgcgctgggtggtggccgcggagctggtcgagaccagccggctgttcgcccgg
acggtcgcccggatcgacccggagacggtcgagaagctcgccgagcacctggtcaagcgc
cagcactccgagccccgctgggacgccaagcgcggttccgtcgtcgccaccgagcgggtc
accctctacgggctcccgctggtcgtgggacgacgggtccagtacggggcgatcgacccg
gtcgtctcccgggagctgttcatccggcacgcgctcgtgcacggggagtggaccacccac
caccggttctggacggagaaccagcgggcgatcgagcgggtcgccgcgctggaggagcgg
gcgcggcgtcgtgacatcgccgtcgacgacgagacgctgttcgagctctacgacggccgc
atccccgccgacgtcgtctccacccggcacttcgaccgctggtggaagcgggcccggcac
gagcagccggacctgctcacgttcacccccgagatgctcgccaacgccgcggtggccgcc
ggggtgcgccctgaggactatcccgacgaggtgcccctgacgcaggggctcaccctgccg
ctgtcctacgcgttctccccgggcgctccggaggacggggtgaccgtcgacgtccccctc
ggcgtgctggacacggtggtgggcgcgacgtccggggagtccctggcgttcacggtcccc
ggactgcgcgaggagctggtgaccgcgctgctgcgcacgctgcccaagcagctgcgccgt
gcgctcgtccccatcccggaccgggtgcgcgaggtcctgccgcggatcgctcccggagag
tcgctgctgccggccctggaacgggaactgcgccgcgcggccggcgtggtgatcccgccg
gacgcctggcaacccgggcaggtgcccgaccacctgcgggcgaccttccgggtgctcgac
gaccagcagcggccgctggccaccgggaaggacctggcggcgctcaaggcgcaggtcgcg
ccccaggcccgggcgagcctggcccgggcctcctcggagctggagcggaccggcctgacc
agctgggacgtcggcacgctgccccgcaccgtggaggtgcgccgcggcgcgcacgtggtg
accgcccatccggcgctggtcgacgagggggccaccgtcggcgtccgcgtcgtgccgacc
gaggccgaggcgacccggctgtcctggcgggggacccggcggctgctggtgctggtcgcc
ggctcgccggccaagcaggtggtcaagggcctcgggccgggcacccggctggcgctgcag
ttcaacccggacggcgagatccccgacctggtcgccgattgcgtggacgccgccgccgac
gagctgatcgccgccgccggtgggccgccgcgcgatccggacgccttcgccgcactggtg
gcgacggcgaagcagcagctgcccccgctcaccgccgacaccgtgcgccgcgtcgaggcg
gtgctcacccaggcgcgggaggtggcggtcgcgatcggtgccgcgccggcccgccgggtg
ccggaggccgccgtcgcggatctgcgccggcagatgacggggctgctgcaccgcgggttc
gtggccgcgaccgggcggcggcggctgcccgacgtcgtccggtacctgcgggcgatggtc
caccggctggagaagctgcccgcgaacgccgcccgcgacgagctctggatgcaacaggtc
gccgcggtggccgccgagtacgagcagctgcgccgtcaggtgccctcgaccggggcgccc
gacgacccggtgacccgggtgcgctggatggtcgaggagctccgggtggggctgttcgcc
cagatcgtaggcaccccacggccggtctccgagcagcggatccacaaggcgatcgacgcg
ctgctgatgtga
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