Bacillus selenitireducens: Bsel_0107
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Entry
Bsel_0107 CDS
T01243
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bse
Bacillus selenitireducens
Pathway
bse03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bse00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bsel_0107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bse03021
]
Bsel_0107
03400 DNA repair and recombination proteins [BR:
bse03400
]
Bsel_0107
Enzymes [BR:
bse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bsel_0107
Transcription machinery [BR:
bse03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bsel_0107
DNA repair and recombination proteins [BR:
bse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bsel_0107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADH97656
UniProt:
D6XVN3
LinkDB
All DBs
Position
129404..133009
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASSDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGETPLETKQLLSEKEYRAYYDKYGRSFKATMGAEAIRKLLE
DIDLDKEADMLKEELETAQGQRRTRAIKRLEVLEAFRHSDNDPSWMVLDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVGQGLAHNIKSAKRKVERVQPEVWDVLEDIIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAESRLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERENAVGEGSIFTGPNEVLSAYQAGYVHLHTRIAMP
VTSINKTNFEDAVQDHYLLTSVGKVIFNEILPDSFPYINEPSAVNLEEVTPRKYFVPRGT
DIKAEFKERELISPFKKGFLGDIIAEVFKKFKISETSVMLDKMKELGFYYSTKAGITIGV
SDIVVLKDKQDILDEADEKVTRVTKQFRRGLITEEERYDKVIEIWSNAKDVIQEKLLGTL
VKTNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRTDDCGTDRGLEVKAIKEGTEVIESLY
DRLVGRVSFQRIYHPETGELLADRNQDITEDMAKVIEDAGVQNVMIRSVFTCDTKHGACK
KCYGRNLATGAEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVF
EARNPKGQAVISEIEGTVAEIKDQNDKKEIVIQGPVETRNYPTMYGARMKVKEGDTILAG
QELTEGSIDPKELLQVSGVQGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMMRKVRVI
DSGDTDILPGSLVEIHQYSDANREVLLKGGRPATGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDQLVGLKENVIIGKLVPAGTGMQRYRQLKAVNTEDNSDIIEQPAGT
E
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtgaataattttgaatatatgaaaatcggtctcgcttcgtctgataaaatc
cgctcatggtcacgcggggaagtcaagaagcctgagaccatcaactaccgaacgttaaaa
cctgaaaaagacgggttgttctgcgagcgtattttcggtccgacaaaggactgggaatgc
cactgtggaaaatacaagcgtgtccgttacaaaggcgtcgtctgcgaccgctgtggcgtt
gaagtcacacgcgccaaggtccgccgcgaacgcatgggacatatcgaactggctgcgccg
gtatcccacatctggtatttcaaagggattccgagccgcatgggcctcgttctcgatatg
tcgccacgttcccttgaagaagtgatctacttcgcttcctatgtggtcacggatccggga
gagaccccgcttgagacaaagcagctcctttctgagaaggaataccgtgcctattacgat
aagtacggccgcagttttaaggcgaccatgggtgccgaggcaatccgcaagcttcttgag
gatatcgatctcgacaaagaagcggatatgctgaaagaagagcttgagaccgcgcaggga
caacgaagaacccgggcgatcaagcgccttgaggtccttgaagccttccgtcattcggat
aacgatccgtcatggatggttctcgatgtgcttccggtcattccgccggaactgcgtccg
atggtacagctcgacggtggacgttttgcgacatccgacctgaacgatctgtatcgccgg
gtgatcaaccgtaacaaccgtctgaagcggcttctcgatctcggtgcaccgagcatcatc
gtgcaaaatgagaagcggatgctgcaagaagcggttgatgcgctgatcgacaatggccgt
cgtggacgaccggtcacaggaccgggtaaccgtccgctcaaatccctctcacacatgctg
aaagggaagcagggacgtttccgtcagaacctgctcggaaagcgtgttgactattcaggg
cgttccgttatcgttgtcggtccgaacctgaaaatgtatcagtgcggactgccgaaggaa
atggcccttgaactcttcaaaccgttcgtcatgaaagaactcgtaggacaggggctcgcg
cataacatcaagagtgcaaagcgcaaagtcgaacgcgtgcagccggaagtgtgggatgtc
cttgaagacatcatcaaagagcatccggtactcttaaaccgtgcaccgacacttcaccgt
ctcgggattcaggcatttgagccgattctcgtggaagggcgcgccatcaaacttcacccg
ctcgtctgtaccgcctacaacgcggactttgacggtgaccagatggccgttcacgtgccg
ctctctgcagaagcgcaagcggaaagtcgtctcttgatgcttgccgcacagaacatcctg
aacccaaaggatggcaagccggttgttactccttcccaggatatggttctcggtaactat
tacctgaccctcgagcgtgaaaacgccgttggtgaagggtcaatcttcaccggcccgaat
gaggtcctcagtgcatatcaggcgggctatgtccacctgcatacacggatcgccatgccg
gttacgtccatcaacaagacaaactttgaggatgccgttcaggatcactacctgctgacg
tccgtcggtaaagttatcttcaatgaaatcctgccggactcgttcccgtatatcaacgag
ccgtctgcagtgaaccttgaagaagtgacgccgcgcaagtacttcgttccgcggggtacg
gatatcaaagcggagttcaaagaacgtgaactcatttcaccatttaaaaaaggcttcctc
ggcgacattattgccgaagtctttaagaagttcaaaatctccgaaacctccgtcatgctt
gataagatgaaggagctcggattttattactcgacgaaggccggtatcaccatcggtgta
tccgacatcgtcgtattgaaagacaagcaggacatccttgatgaagcggatgaaaaagtc
acccgtgtcacaaagcagttccgccgcggtctgatcacggaggaagagcgttatgacaaa
gtcattgagatctggagtaacgcaaaagatgtcattcaggagaagttgctcggcaccctc
gtcaagacgaacccgatctttatgatgagtgattccggagcgcgtggtaacgcgtccaac
ttcacccagcttgccggtatgcgtggtctcatggccaatccatccggacgtattattgaa
cttccgatcaaatccagtttccgtgaaggtctgacggtactcgagtactttatttccaca
cacggtgcacgtaaaggtcttgcggatacggcccttaagacagccgactcaggttacctg
acacgtcgtctcgttgacgttgcacaggacgtgattatccgcacagacgactgcggcaca
gaccgcggtctcgaagtgaaagcgatcaaagaaggaacggaagtcatcgagagtctttat
gaccgcctcgtcggccgtgtctccttccagcgtatttatcatccggaaaccggggaactc
ctcgccgaccgtaatcaggacattacggaagacatggcgaaagtcattgaggatgccggt
gtccagaacgtcatgatccgttcggtcttcacgtgtgatacaaagcacggcgcctgcaag
aagtgttacggccgaaaccttgctacaggagcagaggttgaagtcggggaagctgtcggc
atcatcgcagcccagtccatcggtgagccgggtacccagcttacgatgcgtacgttccac
acaggcggggttgccggagacgacatcacccagggtcttccgcgtatccaggaagtgttc
gaggcccgtaatccgaaaggtcaggccgtcatttccgagatcgagggaaccgttgctgaa
atcaaagaccaaaatgataagaaagaaatcgtcattcagggtcctgtggaaacacggaac
tacccgacgatgtacggagcccgcatgaaggtgaaggaaggcgatacgatcctcgccggt
caggaactgaccgaagggtccatcgatccgaaagaactccttcaggtatccggtgtacag
ggcgttcaggaatatctccttcgcgaagtacagaaagtttaccgcatgcagggtgttgaa
atcggcgataaacacgtcgaagtcatggtgcgccaaatgatgagaaaagtccgcgtcatt
gattcaggggatacggatatccttccaggctcccttgttgagatccaccagtacagcgac
gcaaacagggaagtccttctcaaaggcggcagacctgccacaggtcgtccggtccttctc
gggatcacgaaagcttcccttgaaacagattccttcctgtctgcagcatcgttccaggag
acaacgcgtgtcctgacggatgccgcaatcaaaggaaaacgcgatcagctcgtcggactc
aaggaaaatgtcatcatcggtaagcttgttccggcaggtacaggcatgcagcgttaccgc
cagttgaaagccgtgaatacggaagacaacagtgatatcatcgaacagcctgcgggcact
gaataa
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