Bacillus selenitireducens: Bsel_3178
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Entry
Bsel_3178 CDS
T01243
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bse
Bacillus selenitireducens
Pathway
bse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsel_3178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bse03021
]
Bsel_3178
03019 Messenger RNA biogenesis [BR:
bse03019
]
Bsel_3178
Transcription machinery [BR:
bse03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Bsel_3178
Messenger RNA biogenesis [BR:
bse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bsel_3178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
NACHT
Mor
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
ADI00660
UniProt:
D6Y0U2
LinkDB
All DBs
Position
complement(3427519..3428802)
Genome browser
AA seq
427 aa
AA seq
DB search
MGLTINEMEKLTLKDLYQLAKDKGLSSYSQLSKKELIFAIMQKQAENEDLMFMEGVLDII
PNEGFGFLRSNTYKPSPQDVYISASQIRRFRIRNGDKVSGKVRKPKENERYYGLLQVAAV
NGEDPERASERPHFPQLTPLYPEKRITLETEPNKVASRVVDMVSPIGLGQRGLIVAPPKA
GKTLLLQEVADSIAKNHPDLELMVLLIDERPEEVTDMERSVKGEVISSTFDEVPENHIKV
AELVLDRAMRLVEAKKDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPASFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRKLAERRVFPAIDIRR
SSTRREELLMNKEQIENLWSMRRTMNDQPEFLERFLKKVKQTKTNQDFFDEFEKEKAGKA
KPKQTRS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggcttaacgatcaatgaaatggagaagctgaccctgaaagacctctatcagcttgca
aaagacaaggggctgtcgagctacagccaactctccaaaaaagaactcatttttgccatt
atgcaaaaacaggctgagaatgaagatctcatgtttatggaaggggtgctcgatatcatc
ccgaatgaagggtttggtttccttcgttcaaatacgtataagccaagtccgcaggatgtg
tatatttccgcgtcccagatcagacgttttcgtatccgcaatggggacaaagtctccggg
aaagtccgtaaaccaaaggaaaacgagcgttattacggacttttgcaggtcgccgctgta
aacggggaagatccggagcgtgccagtgaacgtccgcacttcccgcagttaacgcccctt
tacccggagaagcggatcactcttgagaccgaaccgaacaaggttgcatcgagggttgtg
gatatggtgtcgccaatcggactggggcagcgcggactgattgtggccccgccaaaagca
gggaaaaccctgctcttgcaggaggtcgcagacagcattgccaaaaatcaccctgacctc
gagctgatggtgcttctgatcgatgaacgacctgaagaagtgacggatatggaacgctct
gtcaaaggggaagtcatcagctccacctttgatgaagtgccggaaaaccatattaaggtc
gccgaacttgtccttgaccgggccatgcgccttgtggaggcgaagaaggatgtcgtcatc
ctcatggacagcatcacccgccttgcgagggcctataacctcgttgtgccgccgagcggg
cggacgctctccggggggattgaccctgcgagttttcaccgtccgaagcgtttcttcggg
gcggcgaggaacattgaagaaggcggaagcctgacgatccttgccacggctctcgttgat
accggttcaaggatggacgacgtgatctatgaggagttcaaaggaacagggaacatggag
ctgcacctcgaccgcaagctcgcagaacgccgcgtattcccggcgattgatatccgccgc
tcctcaacccgccgcgaagagctcctgatgaataaagaacagattgagaatctttggtcg
atgcgccggacgatgaacgatcagccggaattccttgagcgcttcctgaagaaagtgaag
caaacgaagacgaatcaggatttcttcgatgagtttgaaaaagaaaaagcgggcaaggcg
aaaccgaaacagaccaggagctga
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