Bradymonas sediminis: DN745_00585
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Entry
DN745_00585 CDS
T05497
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsed
Bradymonas sediminis
Pathway
bsed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DN745_00585 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsed03400
]
DN745_00585 (mfd)
Enzymes [BR:
bsed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DN745_00585 (mfd)
DNA repair and recombination proteins [BR:
bsed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DN745_00585 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
IstB_IS21
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWV87901
UniProt:
A0A2Z4FG49
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All DBs
Position
168674..172408
Genome browser
AA seq
1244 aa
AA seq
DB search
MSSENSSDYPEQLTMSDALLAGKTMATEADAQQLEIKEAQQQQEQSRLEPDFEGRYPIDD
LMERLGVDGEDAGPAHLQISGASGALRACILADLSHRIHRPLVILSASEGDARELADDLG
VFVLSDSEPYEGLLDQVVHYPDFDIGPYHSASPERKLMMQRLGVLHLLGGEHPPRYTVAP
VAAALRKTIGRESMRAFTRRYELGDEMANEDLRVYLANSGYGEVAVVEDPGTFAIRGDII
DIFVPASAYPMRVERWGDEVNEIRSFNPETQRTVEEHLSVEIIPARQEILDEQLVRDSRG
RLRALAESLGYSSRKVREITMDLEAGLHFIGIDALLPALHAEVNDLLDYIPENALVVLVE
PEAALQEAQNLIENQRAEYAREIEKGELVFPVDQYYREAPEMLGWVEGRTERLEFRRVAM
HRAKTPKATEEMAFALARREDSFVFSARPNTDVVRLRKENRGVQATIEALVEQLQQWKQN
YGRICFACRTAGQVDRLVSLLKSYGEDAMEMEPPIDVGEPVPPPAGLIEVYKATISAGFR
SEHLGLCLISGEEVFGKRVATRETKSITEHAEITHFRDLKPGDYVVHVDFGIGKYHGLVN
LEVAEINADFLHLEYADGAKLYIPVHRLGKVQKYIGSASDSLRLDKMGGSSWERTKDRVK
EQIREIAGDLLRLYAQRDLARGYRFSAPDDYYREFEEDFPFEETPDQARAIRDTLSDMQG
KRPMDRLVCGDVGFGKTEVAIRAAMKAVMDGKQVAVLVPTTILCEQHRISFRKRCEKFGA
RVEAISRFRTPKEAKEIMADTADGKVDILIGTHRLLSDNVNFRDLGLLIVDEEQRFGVTH
KDKIKKMRTNIDVLTLSATPIPRTLQMSLLGIRDLSIIATPPHNRLAVRTHVAKLSDGIL
REAIMREISRGGQVFVVHNRVKTIDALAERIGELVPEARISVGHGQMSETALEDVMLSYI
EGETNVLVSTAIIESGLDIPNANTIIIDRCDLFGLSQLYQLRGRVGRGSERAFAYLLIPP
NRLLPKDAQARLEVIQTHTELGSGFQVATYDLEIRGAGSLLGDSQSGHVQAVGLDLYTEL
LEETINEMRGLDGDQDIEPEVNMPVEAFIPSSYIEATSLRLMFYKRFSLARTRDELFDVF
DELVDRFGKPPEEVRNLRDVIAIKAACRQLSATRFDCGPSAISIELDPRTSLAPEKVVAF
IHETRGRLRLTEEMKLIFSLTPEESARPLETSRAFVEKLLNYRA
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgaaaatagcagtgattatcccgaacagctcaccatgtcagacgcactctta
gcggggaagacgatggccaccgaggcagacgcgcagcagcttgagatcaaagaggcccaa
cagcagcaggagcagtcgcgcctggagcccgacttcgaagggcgctacccgatcgacgat
ctgatggagcgcctgggcgtggatggcgaggacgcggggcccgcgcacctgcagataagc
ggggcgagcggggcgctgcgcgcgtgcatcctggcagatttgagccatcggattcatcgg
ccgctggtgatcttaagcgcgtcggagggcgacgcgcgcgaattggctgacgacctcggg
gtcttcgtgctcagcgacagcgagccctacgaggggttgttggaccaggtcgtccattat
cccgacttcgacatcggcccgtaccacagcgcctcgccggagcgaaagctgatgatgcaa
cgcctgggggtgctgcatcttctgggcggggagcacccgccgcgctatacggtggcgccg
gtggcggcggcgctgcgaaagaccatcgggcgcgagtcgatgcgcgcgtttacgcgccgc
tacgagctgggcgacgagatggccaacgaggatcttcgggtctatctggccaatagcggc
tacggcgaggtggcggtggtcgaggacccgggcaccttcgcgattcgtggcgatattatc
gatatcttcgtgcccgccagcgcctatccgatgcgcgtggagcgctggggcgacgaggtg
aacgagatccgcagcttcaacccggagacccagcgcaccgttgaggagcatctgagcgtc
gagatcatccccgcgcgccaggagatcctcgatgagcagctggtgcgcgactcgcgcggc
cggctgcgcgcgttggccgagagcctggggtattcgagccgcaaggtgcgcgagatcacc
atggatctcgaggcgggcctgcattttatcgggatcgacgcgctcttgcccgcgctgcac
gccgaggtaaatgacctgctcgactatatccccgagaacgctctggtggtgttggtcgag
ccggaggcggcgctgcaggaggcgcagaatctgatcgagaaccagcgcgctgaatacgcc
cgcgagatcgagaagggggagttggtcttcccggtggaccaatattatcgcgaggcgccc
gagatgctcgggtgggtcgaggggcgcacggagcgcctggagtttcgccgcgtggcgatg
caccgggcgaagacgccgaaggcgaccgaagagatggcgtttgccctggcccggcgcgag
gattcgttcgtgttctcggcgcgcccgaataccgatgtggtgcgccttcgcaaagagaat
cgcggggtgcaggcgaccatcgaggcgctggtcgagcagctgcagcagtggaagcaaaat
tacgggcgcatctgttttgcctgccgcaccgcgggtcaggtcgaccggctggtctcgttg
ctcaagagctacggcgaggacgccatggagatggagccgccgatcgacgtcggcgagccg
gtgccgccgccggcggggctcattgaggtctataaggccacgatttcggcgggatttcgc
tccgagcacctggggctatgtcttatctcgggcgaggaggtcttcgggaaacgcgtggcg
acccgtgagaccaagtcgatcaccgagcacgctgagatcacccattttagggatctcaag
ccgggtgattatgtggtgcacgtcgacttcggcatcggtaaataccacggcctggtcaac
ctcgaagtggccgaaataaacgcggacttcctgcaccttgagtacgccgacggggcgaag
ctctacatcccggtgcaccggctggggaaggtgcaaaaatatatcggcagcgcctcggat
tcgctgcgcctcgataagatgggcgggtcgagttgggagcgcaccaaagatcgggtcaag
gagcagattcgcgagatcgccggcgatcttttgcgcctgtacgcccagcgtgacctggcg
cgcgggtaccggttctcggccccggacgattattatcgcgagttcgaggaggacttcccc
tttgaggagaccccggaccaggcgcgcgcgattcgcgacaccctctcggatatgcagggc
aagcgccccatggaccggctggtctgcggggacgtcggctttggcaagaccgaggtggcg
atccgcgcggcgatgaaggcggtgatggatggcaagcaggtggcggtgctggtgccgacg
acgatcctgtgcgagcagcaccggatctcgtttcgaaagcgctgcgagaaattcggcgcg
cgggtcgaggccatcagccgttttcgcacgcccaaggaggccaaggagatcatggccgac
acggccgacggcaaggtcgacatcctcatcggcacccaccgcctgctgtcggataatgtg
aattttcgcgacctcggcctgctgatcgtcgacgaggagcagcgcttcggggtgacgcac
aaagataagatcaagaagatgcgcaccaacatcgacgtgctgacgctgagcgccacgccg
atcccgcgcaccctgcagatgagcctgctggggatccgggacctgtcgatcatcgccacg
cccccgcacaaccggctggcggtgcgcacgcacgtggcgaagttgtccgacgggattttg
cgcgaggcgatcatgcgcgagatctcgcgcggcgggcaggtcttcgtggtgcataaccgc
gtcaagaccatcgacgcgctggccgagcgcatcggcgagctggtgccggaggcccggatc
tcggtggggcacgggcagatgtcggagaccgcgctggaggatgtgatgctctcgtatatc
gagggcgagacgaatgtgttggtgagcaccgcgatcatcgagagcgggctggatatcccg
aacgcgaataccatcatcatcgaccgctgcgacctgttcggcctaagccaactgtatcag
ttgcgcgggcgggtcgggcgcgggtcggagcgcgcgttcgcgtatctgcttattccgccg
aatcgcctgctccccaaggatgcccaggcgcgcctggaggtgattcagacgcacaccgag
ttgggcagcgggttccaggtcgcgacctatgacctggagattcgcggggcgggcagcctg
ctcggcgacagccagtcggggcatgtgcaggcggtcgggttggacctgtataccgagctt
ttggaggagacgatcaacgagatgcgcgggctggacggggaccaggacatcgagccggag
gtcaatatgccggtcgaggcgtttatcccgtcgtcgtatatcgaggcgacgtcgctgcgc
ctgatgttctacaagcgcttctcgctggcgcgcacgcgcgacgagctcttcgatgtgttc
gacgagttggtggaccggttcggcaagccgcccgaagaggtgcgcaacctgcgcgacgtc
atcgcgatcaaggcggcgtgtcgccagctcagcgccacgcgctttgactgcgggccgagc
gccatcagcatcgagctcgacccgcgcacgagcctcgcgcccgagaaggtcgtcgcgttt
atccacgagacccgcggccggctgcgcctgaccgaggagatgaagcttatcttctcgctg
acccccgaggagtcggcgcgcccgctggagaccagccgcgcgtttgtggagaagttgctt
aattaccgggcgtag
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integrated database retrieval system
