Bradymonas sediminis: DN745_03055
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Entry
DN745_03055 CDS
T05497
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bsed
Bradymonas sediminis
Pathway
bsed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DN745_03055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsed03019
]
DN745_03055
Messenger RNA biogenesis [BR:
bsed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DN745_03055
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
Lactamase_B_3
Lactamase_B_6
PSME4_C
Motif
Other DBs
NCBI-ProteinID:
AWV88375
UniProt:
A0A2Z4FHX0
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Position
complement(807401..809116)
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AA seq
571 aa
AA seq
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MTKSKSESSTQVRKHSVPAPPKHDYVRFIPLGGLDEVGMNCALLECNGSMIMIDCGLTFP
EDEFGIDIILPDWTYVMDNLDRLDAVLITHGHEDHIGALPFFLQQVDVPIYSGRLTLAML
NAKLQSHNLGGQVELIPMEAGESVEIGSFVVEFVHTNHSVPNAMSLALKTPLGNFIFTGD
WKMDQTPIYEEPMDMGRFAALGNEGVVGVFGDSTNSETPGFSNSERQVFDGLDDVIENAP
GRVIIAQFSSNIYRVRGMLDLAQKHGRKVALLGRSLTRNFNLACEEEFMEVPADNLIINT
REIDSYPPEKLLIISTGSQAEPRASLTRMGLGDHRSVTINKTDTIVLSARRIPGNERGIF
NMLNNLAKQGATLITAANAPIHATGHAKQEELKLMLNLTRPDVLIPVHGEYRMRMRHAEL
GKSVGVPDCQLVENGDVLEFTKKGAKVVGRVFTGRLLVDGKYMGDEKEMVIRDRADLAQS
GILVAVATIERHSGDISGPIELMQKGFLGDNATEDLMDEAAEFTLEALENLSVKVRKDSN
EVRDAIRTALRRFFRKHLDRKPVVIPVVHEI
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatcaaaaagtgaaagctcgactcaagtgcgaaagcattcggttcctgccccc
ccgaagcatgattacgtgcgttttatcccgctcggcgggctcgacgaagtcggcatgaac
tgcgctcttctcgagtgcaacggctccatgatcatgatcgattgcgggctgacgttcccc
gaagatgaattcggaatcgacatcatcctgcccgactggacctatgtaatggacaacctg
gaccgccttgacgcggtcctgattacccatggtcacgaggatcatatcggggcgctgccc
ttcttcctgcagcaagtcgacgtgccgatttactcgggccgactgaccctggcgatgctc
aacgcgaaattgcagtcgcataacctgggcggccaggttgagctgatcccgatggaagct
ggcgagagcgtggagatcggctccttcgtggtcgagttcgtccacaccaaccactcggtg
cccaacgcgatgagcctggcgctgaaaaccccgctgggcaatttcatcttcaccggcgac
tggaagatggaccagaccccgatttacgaggagcccatggatatgggccgcttcgctgcc
ctgggcaacgaaggcgtggtcggcgtgtttggcgacagcaccaactcggagacccccggc
ttctccaatagcgaacgccaggtattcgacgggctcgacgacgtcatcgagaacgccccg
ggacgcgtgatcattgctcagttctcgagcaatatttaccgggtgcgcgggatgctcgac
ctggcccagaagcacggccgcaaggtcgcgctcctcggccgtagcctgacccgtaacttc
aacctcgcctgcgaggaagagtttatggaggtccccgccgacaacctgatcatcaacacc
cgtgagatcgacagctatccgccggagaaactgctcatcatctccacgggtagccaggcc
gagccgcgcgcgagcctgacccgcatgggcctgggcgaccaccgctcagtcaccatcaac
aaaaccgacaccatcgtgctgagcgcgcgtcgaatcccgggcaatgagcgcggcatcttc
aatatgctcaataacctggccaaacagggcgcgacgcttattacggcggccaacgcaccg
atccacgccaccgggcatgccaagcaggaagagctcaaattgatgctcaacctcacccgc
cccgacgtcctgatcccggtgcacggcgagtaccgcatgcggatgcgtcacgccgaactc
ggaaaatcggtgggcgtgccggattgccagctcgtcgagaacggcgacgtgctcgagttc
accaaaaaaggcgccaaggtcgtgggccgcgtgttcaccggacgcctgctggtcgacggc
aaatatatgggcgacgagaaggagatggtcattcgtgaccgtgccgacctcgcccaatcc
ggcatcctcgtggccgtggccaccatcgagcgccactccggcgacatcagcggtcccatc
gaattgatgcagaaaggcttcctgggcgacaacgccaccgaagacctgatggacgaggcc
gccgagttcaccctggaggcccttgagaacctgtcggtcaaagtgcgcaaggactccaat
gaggtgcgcgacgccattcgcacggcgctgcgacgcttcttccgcaaacatctcgaccgt
aaaccggtcgttattccggtggttcacgaaatctga
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