Bradymonas sediminis: DN745_03135
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Entry
DN745_03135 CDS
T05497
Name
(GenBank) hypothetical protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bsed
Bradymonas sediminis
Brite
KEGG Orthology (KO) [BR:
bsed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bsed03016
]
DN745_03135
Enzymes [BR:
bsed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DN745_03135
Transfer RNA biogenesis [BR:
bsed03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DN745_03135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
DUF4890
CSD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
AWV88391
UniProt:
A0A2Z4FHC1
LinkDB
All DBs
Position
complement(831415..833538)
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AA seq
707 aa
AA seq
DB search
MNIGELIEFSSGDDFRLGAVVGEIGKKKLEIVSSEGEKMRALRTEVTFESGVKIADVSES
TAESGARRFARQVEEAAAEVEVEMLWEFVKDADEPMTLAELSELFFGEVNPPNLLAIFRV
LRDDIIYFKQKKAKRDDLPRFEPRPIAQVEQMQRQREAELEKERERDIFIDGVCEILAVE
DPPERAALSTEKMTDTSFRRLAHVVQDYAIHDEDSNQLAQANELLDQIEERAGRRLRGSK
NLRAFELMVEAGIWDTHENLHLLRRNISTSMSADILEEVRKVCAQAWTPEEWRRDATEIL
TFSIDDISTRDIDDALSVEFLEDGGFRVGVHIADPSARVPVGCELDADARARGTSVYLPT
GNYPMFSPELSHGLMSLVAGELRPSVSTFFDFSADLELVGSEVVPTSVVVDHRLTYAAVD
ALLSEDDAETPEELAGEAELARALALLQRAAEVMLAERNAMGAVSIDLPELDMKVDYSGD
EPVVYCEVLDSNSEARKIVSEWMVANNKLLGEFCREHQLPAIYRTQPKPDEELYTDEILA
LPEGVVREFALVRKMKPGEVSTEPAPHFGLGLSAYVQGSSPIRRFNDLVCQRQVKAFLAG
EPLPYDETDIVEVLGTVENTAKDAKITERETTRYWMLHHLAGRKGEPMQATVVEHKDHND
ALAAVFLHDVALKATCKFTKRPEVGEVCEVTVSSADPRKDTLYLRSI
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcggtgagttgatcgaatttagcagtggcgacgacttccgccttggggcggtg
gtcggagaaatcggcaagaagaagctcgagattgtgagctcggagggcgagaagatgcgc
gcgctgcgcacggaggtcacctttgagagcggcgtgaagatcgcggatgtctcggagagc
accgcggagtccggggcgcgccgatttgcccgacaggtcgaggaggccgcggctgaggtc
gaggtcgagatgctctgggaattcgtcaaagacgccgacgaaccgatgacgctcgccgag
ctctcggagctgttcttcggcgaggttaacccgccgaatttgctggctatttttagagtt
cttcgcgacgatatcatctattttaagcagaaaaaggccaagcgcgacgacctcccgcgt
tttgagccgcgccccatcgcccaggtcgagcagatgcagcgccagcgcgaggcggagctc
gaaaaggagcgcgagcgcgatatcttcatcgacggggtctgcgaaattttggccgtcgaa
gacccgcccgagcgcgcggcgctgtcgaccgagaagatgaccgacacgagctttcggcgc
ctggcgcatgtggtgcaggactacgcgattcacgacgaggactcgaatcaattggcccag
gccaatgagctgctcgaccagatcgaggagcgggctggacgacgcctgcgaggcagcaaa
aacctgcgcgcgtttgagctgatggttgaggccggcatctgggatacccacgagaatttg
cacctgctgcgccgcaatatctcgacctcgatgagcgccgatattctggaggaagtccgc
aaggtctgcgcccaggcgtggacgccggaagagtggcgtcgcgacgcgactgagatcctg
acctttagcatcgatgatatctcgacgcgcgatatcgatgacgcgttgtcggttgagttt
ttggaggacggagggttccgcgtgggcgtgcatatcgccgacccatcggcgcgggttccg
gtggggtgtgagctcgacgcggacgcgcgtgcgcgcggcaccagcgtgtatttgcccacc
ggcaattacccgatgtttagcccggagcttagccacgggttgatgagcctggtggcgggt
gagcttcgcccgagcgtgagcaccttttttgacttcagcgcagacctggaattggtcggc
tccgaggtcgtgccgaccagcgtggtggtcgaccatcgcctgacctacgcggcggtggac
gcgctgttaagcgaagacgacgccgagacccccgaggagctcgccggcgaggcggaactc
gcccgcgcactggcccttttgcagcgcgccgccgaggtgatgctggccgagcgaaacgcc
atgggcgccgtgagcatcgacctgcccgagctcgatatgaaggtcgattattcgggcgac
gagccggtggtctattgcgaggtcttggactcgaattcggaggcccgaaagatcgtcagc
gagtggatggtcgccaataacaaattgctcggggagttttgccgcgagcatcaattgccg
gcgatttatcgcacgcagcccaagcccgatgaggagctttataccgacgaaatcctggcg
ctccccgagggcgtggtgcgcgaattcgcgctggtgcgaaagatgaagcccggcgaagtc
agcaccgagccggcgccgcattttgggctcggactgtcggcctatgtgcagggctccagc
ccgattcgccgcttcaatgacctggtctgccagcggcaggtgaaggcgtttttggccggc
gagccgctgccctacgacgagaccgatatcgtggaggtgctgggcaccgtggagaatacc
gccaaagacgccaagatcaccgagcgcgagaccacccgctattggatgctgcaccacctg
gccggtcgcaagggcgagcccatgcaggccacggtcgtcgagcataaggaccataatgac
gcgttggcggcggtgtttttgcacgatgtcgcgctcaaggcgacctgcaaattcaccaag
cgcccggaggtcggcgaggtgtgtgaggtcacggtctcgagcgcggacccgcgcaaagat
acgctgtatttgcgctcgatctaa
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