Bradymonas sediminis: DN745_13090
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Entry
DN745_13090 CDS
T05497
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bsed
Bradymonas sediminis
Pathway
bsed02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bsed00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DN745_13090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsed03021
]
DN745_13090
Transcription machinery [BR:
bsed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DN745_13090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DegS
Motif
Other DBs
NCBI-ProteinID:
AWV90217
UniProt:
A0A2Z4FMK2
LinkDB
All DBs
Position
complement(3462237..3464048)
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AA seq
603 aa
AA seq
DB search
MQKARAEVRKTSLQVRKLVSMGKEKGYLTFKEVNDSLKPGVLTSNQIDDMLMLFEELDIQ
VVDKASQYEPPADDEDGGKKLRAETRGSEKKRKGGDFVKGNDPVRMYLRKMGQVPLLTRE
GEVAIAKRIEEGERTILTVVLSTTVGVREMILLGERVRKSKVKLTDVLQAPNPDDLPRDE
EGNVIELTVDERRKWFCDQIDKVKTRYHENRIKGEILITRAGLSDADRKRLCEEIKSNRR
EMFRVMKGVRLTKKHTDKIVAKFKALIHRTDRAEEELEKLERLYRIKFADVKECSRLYRT
EYVDEADALRQSMGLSMARMTAIWKEMRGLQRRVRAVEVEAGQTIDTLRVTHQAVLAGER
IAERAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY
ATWWIRQAITRAIADQARTIRIPVHMIETINKLSRTERYLIQELGRAPRPEEIAEKMDMP
VEKVRKVLKIAKEPISLETPIGEEQDSSLGDFIADEHAINPSEAVEDSNLTDQTRKVLST
LTSREEKVLRMRFGIGGKSDHTLEEVGQDFNVTRERIRQIEAKALKKLRHPSRAKQLESF
IDT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaagcccgcgcagaggttcgaaagacgagcttgcaagtccgcaagctcgtttcg
atggggaaggaaaaagggtatttgacctttaaagaggtcaacgattccctgaagccaggg
gtgctaacgagcaaccagatcgacgatatgctgatgcttttcgaggagctggacatccag
gtcgtcgacaaggccagccaatacgagccgccggccgatgatgaggatggcggcaaaaaa
ctgcgcgctgagacgcgtggctccgagaagaaacgaaagggcggtgacttcgtcaaaggc
aatgacccggtgcgcatgtatttgcgcaagatgggccaggtgccgctgcttacccgtgag
ggtgaggtcgcgatcgccaagcgcatcgaagagggtgagcgcacgatcctgacggtggtg
ctcagcaccaccgtgggtgtgcgcgagatgatccttttgggcgagcgcgtgcgcaaatcc
aaggtgaagctgaccgacgtgctccaggcgcccaaccccgacgacctgccgcgcgacgaa
gagggcaacgtcatcgagttgacggtcgatgagcggcgcaagtggttctgtgaccagatc
gataaggtcaagacgcgctaccatgagaatcgcatcaagggcgagattttgatcacgcgc
gccgggctctccgacgcggatcgcaagcgcctgtgtgaggagattaagtccaaccgtcgc
gagatgttccgcgtgatgaagggcgtgcgcctgaccaaaaagcataccgataagatcgtc
gccaagttcaaggcgttgattcatcgcaccgaccgcgccgaggaggagctcgagaagctt
gagcgcctgtatcggattaaattcgccgacgtcaaagaatgctcgcgtctgtatcgcacc
gagtatgtcgacgaggccgacgcgctgcgccagagcatggggctttcgatggcgcgcatg
accgccatctggaaagagatgcgcgggctgcagcggcgggtgcgcgcggttgaggtcgaa
gccggccagaccatcgacaccctgcgcgtcacccaccaggcggtgctcgccggcgagcgc
atcgcggagcgcgcgaagagtgagttggtcgaggccaacctgcgcctggttgtgtcgatc
gccaagaaatacaccaaccgcggcctgcagtttctcgacctgattcaggagggcaatatt
ggcctgatgaaagcggtcgataaattcgagtaccagcgtggttataaattctcgacctac
gcgacctggtggattcgccaggcgattacgcgcgcgattgccgaccaggcgcgcacgatt
cgtatcccggtgcatatgatcgagacgatcaacaagctcagccgcaccgagcgctatctc
atccaggagctcggccgcgcgccgcgccccgaagagatcgccgagaagatggacatgccg
gtcgagaaggtgcgcaaggtcctcaaaatcgccaaagagcccatctcgcttgagacgccg
attggtgaggagcaggattcgtcgctgggcgattttattgccgacgagcacgccatcaac
ccctccgaggcggtcgaggacagcaacctcaccgaccagacccgcaaggtcttgtcgacg
ctgacctcgcgcgaagagaaggtcctgcgcatgcgctttggcatcggcggaaagtccgac
cataccctcgaagaggtcggccaggacttcaacgtcacgcgcgagcgtattcgccagatt
gaggcgaaggcgctcaagaagctgcgccatccctcgcgggccaagcagcttgagagcttt
atcgacacctga
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