Bradymonas sediminis: DN745_15445
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Entry
DN745_15445 CDS
T05497
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bsed
Bradymonas sediminis
Pathway
bsed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DN745_15445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsed03019
]
DN745_15445
Enzymes [BR:
bsed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DN745_15445
Messenger RNA biogenesis [BR:
bsed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DN745_15445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Cas3-like_C_2
HEM4
NACHT
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AWV90641
UniProt:
A0A2Z4FNN6
LinkDB
All DBs
Position
complement(4096441..4097787)
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AA seq
448 aa
AA seq
DB search
MENFQELDLIEPLQRAIAAENYESPSEIQAQAIPSILEGRDLLGCAQTGTGKTAAFSLPM
LHILSESQNTKGRRVPRGLILSPTRELAAQICSSIETYGKFLSLRSTVIYGGVSERPQIR
DLKKGVDIIVATPGRFLDLMSRGFIDLNAIEFFILDEADRMLDMGFINDIRKIINKLPKK
RQNLLFSATLPSSIVQLANQMLRNPVTVEVAPETPTLDAIEQRLMFVTKADKANLMVHLL
KAPDVSRSIIFTRTKHGANRLTERLEKAGFPATAIHGNKSQAARRRALNGFRKGSYDILV
ATDVASRGIDVDDVTHVFNYDLPDEAESYVHRIGRTGRAGRSGVAISFCDTSEGHKLRSI
EKTIAQAIPPDEEHEFHSPAAMASRNDRKKSSKGGGRRGNNSRGRNSRNKSRGKSGGNSR
GRNSSRRKSTTPAKKSGEGAKRRGGNRR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaattttcaagagctcgatcttattgagccgctccagcgcgcgatagccgctgaa
aattacgaatcaccgtcggaaattcaagctcaagccattccttcgattttggaaggtaga
gatctgctcggttgcgcccagacaggcaccggtaaaacggccgccttttcactccccatg
cttcatattctgagcgagagccagaacacgaagggccgacgtgtgccccgtggactgatc
ttgtcgccgacgcgtgagttggcggctcagatttgctcgagcatcgagacctacgggaaa
ttcctctcgctgcgcagcaccgtgatttacggtggtgtcagcgagcgcccgcagattcgc
gaccttaaaaagggcgtcgatattatcgtggcaacgccgggtcgattcctcgacctgatg
agccgtggttttatcgatctgaacgccatcgagttcttcatcctagatgaagccgatcgt
atgctcgacatgggtttcatcaacgatatccgcaagatcatcaataagctgcccaagaag
cgccagaacctgctcttctcggcgaccttgccctcgagcatcgtccagcttgccaaccag
atgttgcgcaaccccgtgaccgtcgaagtcgcgccggaaaccccgacgctcgacgccatt
gagcagcgcttgatgttcgtgacgaaggccgacaaggcgaacctgatggtgcacctgctt
aaggcgccggacgtgtcgcgctcgatcatcttcacgcgcaccaagcacggcgcaaaccgt
ctgaccgagcgcctggagaaggccggcttccccgcgaccgccattcatggcaacaaatcg
caggccgctcgccgccgcgcgctcaacggattccgcaagggctcctacgatatcctggtg
gcgaccgacgtcgcctcgcgcggcatcgacgtggatgacgtcacgcacgtgttcaactac
gacctgccggacgaagccgagagctacgtccatcgcatcggtcgaaccggtcgcgccgga
cgaagtggcgtggccatctcgttctgcgatacctcggaagggcataaattgcgctcgatc
gagaagaccatcgctcaggcgatcccgccggatgaggagcacgagtttcactccccagcc
gcgatggcgagtcgtaatgaccgcaaaaagagcagcaaaggtggtggccgtcgcggaaat
aattcgcgtggccgtaactcgagaaataaatcgcgcggcaagtccggcggaaattctcgg
ggcagaaattcctcgcgtcgcaagagcaccacgcccgcaaagaaatcgggcgagggcgca
aagcgccgcggcggcaatcgccgctga
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