KEGG   Bradyrhizobium sediminis: KMZ68_00965
Entry
KMZ68_00965       CDS       T08500                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bsei  Bradyrhizobium sediminis
Pathway
bsei03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsei00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KMZ68_00965 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsei03021]
    KMZ68_00965 (rho)
   03019 Messenger RNA biogenesis [BR:bsei03019]
    KMZ68_00965 (rho)
Transcription machinery [BR:bsei03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     KMZ68_00965 (rho)
Messenger RNA biogenesis [BR:bsei03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     KMZ68_00965 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 AAA Fungal_virus_P2_C DUF5817_CT
Other DBs
NCBI-ProteinID: QWG18507
LinkDB
Position
191816..193081
AA seq 421 aa
MREIKLQDLKSQTAAELVSFAEEKGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPA
IDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIDFLLDKLRNTKNNAEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaataaaacttcaagacctcaaatcccaaacggcagccgagctcgtctcgttc
gcggaagaaaagggggtcgaaaacgccagcaccatgcgcaagcaggagctgatgttcgcc
attctcaaacaactcgcgatccaggaaaccgacatcatcggcgaaggcgtcgtcgaggtt
ctctccgacggcttcggatttctgcgctcgccggacgcgaattatctgccggggccggat
gatatctacgtctcgccatcgcagatccgccgcttcggacttcgcaccggcgataccatc
gaaggccacatccgcagcccgaaggaaggcgaacgctattttgcgctgctgaaggtcaac
acgctgaatttcgaggacccggagaagtccaagcacaaggtcaatttcgacaatctgacg
ccgctgtttcccgatcagcgcttccggctcgagctcgaagaccccaccagaaaggatctt
tctgcaagggttatcgatatcgtcgctccgatcggcaagggtcagcgcgccctgatcgtg
gcgccgccgcgcaccggcaagaccgtgctgatgcagaacatcgcgcattcgatcacggcc
aatcatccggagtgctatctgatcgtgctcttgatcgatgagcgtccggaagaagtcacg
gacatgcagcgctcggtgaagggcgaagtcgtctcgtcgaccttcgacgagccggccgtg
cgtcacgtccaggtcgccgagatggtgatcgagaaggccaagcggctggtcgaacatggc
cgagacgtggtgatcctgctcgactcgatcacgcgcctgggccgggcctacaacaccgtg
gtgccgtcatccggcaaggtgctgaccggcggcgtcgacgccaatgcgctgcagcggccg
aagcggttcttcggcgccgcgcgcaacatcgaagagggcggttcgctcaccatcatcgcc
accgcgctggtcgataccggcagccgcatggacgaagtcattttcgaagagttcaagggc
accggtaactcggagctgatcctcgaccgcaaggtttcggacaagcggaccttcccggcg
atcgacatctcgcgctccggcacccgcaaggaagagctgatcaccgacccgcaactcctc
aagaagatgtacgtgctgcgccggatcctcaatccgatgggcaccatggacgccatcgac
ttcctgctcgacaagctgcgcaacaccaagaacaacgcagaattcttcgaatcgatgaat
acctga

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