Buttiauxella selenatireducens: RHD99_15345
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Entry
RHD99_15345 CDS
T09954
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bsel
Buttiauxella selenatireducens
Pathway
bsel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHD99_15345 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsel03019
]
RHD99_15345 (rne)
03009 Ribosome biogenesis [BR:
bsel03009
]
RHD99_15345 (rne)
Enzymes [BR:
bsel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RHD99_15345 (rne)
Messenger RNA biogenesis [BR:
bsel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHD99_15345 (rne)
Ribosome biogenesis [BR:
bsel03009
]
Prokaryotic type
rRNA processing factors
RHD99_15345 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WMY72840
UniProt:
A0ABY9S7A9
LinkDB
All DBs
Position
3317078..3320392
Genome browser
AA seq
1104 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIGALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRDAVSAIETRQGGVKAIIVPNDQME
TPHYSVLRVRKGEESKTLSYMLPKRYEEEMAVPSEEEYAERKRPEQPALATFVMPDVPPA
PPESAPSATPAPAAKPAVAKAATAAQPGLLSRFFGALKNLFAGESTPESKDVQEAKPAET
ESQRQSQDRRNNRRQNNRRDRNDRSDRNNRDRDNRGERDNRSENRDNREPRENRDRDENR
RNRRQGQQQNTEVRETRQNVAEEIEKPKARDEQQPRRERNRRRSDDKRQAQQEVKVLQRD
ETVAVEVEAEQEERVQVMPRRKQRQLNQKIRFESASDSSVETVVTPDVAEVSAAPVARTD
LATIPLPAVIEKPAVEQDDNNDSRNDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQS
PMPMTVACASPELASGKAWISYPVARAQEESQYNNVEQAPAATIEQPSAHVNVEQPVVHV
VAAQAAVETVNVETAHVETTHPEVIATPVNEQPHLIAAIDDVVAEQVIDEVEAAQDDVAV
ATHQQQAAELAQEASVVVDNVVVDTVAAAPVEDVKPVEVVAQEAVVEETKVEETQVETAV
VEEPVIAVVPEVKAAQPEVAAVTHVTKHATAPMTKAPAPEYTPEAPRQSDWVRPTYEFSG
RGSAGGNSATHQATAPATRPQSAE
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcgactcagcaagaagagttgcgtgtcgcccttgtagat
gggcaacgcctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagctaac
atctataaaggcaaaatcacccgtattgaaccaagtctggaagcggcatttgtagattac
ggcgctgaacgtcatggtttccttcctcttaaagaaattgcccgcgaatatttcccgtct
aattattcatcacatggtcgtccgaacattaaagatgttttgcgcgaaggccaggaagtg
attgttcagattgataaagaagaacgtggtaataaaggcgcagccttaaccacctttatt
agtctggccggtagttatttggtactgatgccgaacaacccgcgtgcaggtggtatttcc
cgccgtatcgagggtgacgaccgtactgaactgaaagaagccctttcctctctggaactg
ccagatggcatgggtctgattgtacgtactgctggcgtgggtaaatccgctgaggcactg
caatgggatttaagcttccgtctgaagcattgggaagcgattcaaaaagcggctgaaaac
cgccctgcaccattccttattcaccaggaaagcaacgttattgtgcgtgctttccgtgat
tacctgcgtcaggacatcggtgagattcttatcgataacccgaaagtactcgaactggct
cgccagcatatcggtgctctgggtcgccctgatttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgtttagccattaccaaattgagtcgcagattgaatccgctttccag
cgtgaagtccgtctgccatccggtggttcgattgttatcgactccaccgaagcactaacc
gctatcgacatcaactccgcgcgcgcaactcgcggtggcgatatcgaagaaacggcattt
aataccaaccttgaagcggctgatgaaatcgcacgccaactgcgtttgcgtgacctcggt
ggtctgattgttatcgacttcatcgatatgaccccagtgcgccaccagcgcgcggtagaa
aaccgtctgcgtgaagccgtgcgtcaggacagggctcgcatccagataagccacatttcg
cgctttggtctgctggaaatgtctcgtcagcgtctctccccttccctgggtgagtccagc
caccacgtttgtccgcgttgtagcggtacaggtaccgtgcgtgacaacgaatctctgtca
ttgtctattctgcgtttgattgaagaagaagcactgaaagagaacacgcaagaagttcac
gcgattgttccggtgccaattgcttcttacctgctgaacgaaaaacgtgatgcagtcagt
gcgattgaaacccgtcagggcggcgtgaaagccatcatcgttcctaacgatcagatggaa
acgccacactattcggtactgcgcgtgcgtaaaggcgaagaaagcaaaacgctgagctac
atgctgccgaagcggtatgaagaagagatggctgtgccatctgaagaagagtacgccgag
cgtaaacgtccagagcaacctgcgctggcaactttcgtgatgcctgacgtaccaccggca
ccaccagagtcagcaccatctgcaacgccagctccagcggctaaacctgctgtcgcgaaa
gcggcaaccgctgcgcaacctggtctgctgagccgtttctttggcgccctgaaaaacctg
tttgctggtgaaagcacgccagaaagcaaagacgttcaggaagcgaagcctgctgagact
gaaagccaacgtcaaagccaggatcgtcgcaataaccgtcgtcagaataaccgccgtgac
cgtaacgaccgttcagatcgcaacaaccgcgatcgtgataatcgtggcgagcgcgataac
cgcagcgaaaatcgtgataaccgtgagccgcgcgaaaaccgcgatcgtgacgagaaccgc
cgtaatcgccgtcagggccaacagcaaaatactgaagtgcgtgaaacacgtcagaacgtt
gctgaggaaattgaaaaaccaaaagcacgtgatgagcagcaaccacgccgcgaacgcaac
cgtcgtcgtagcgatgataagcgccaggcacagcaagaagttaaagttctgcagcgcgat
gaaaccgtagcagtagaagttgaagctgagcaggaagaacgcgtccaggtcatgccgcgt
cgtaagcaacgtcaattgaaccagaaaattcgtttcgaatctgcgtcagattcaagcgtt
gaaactgtagtcactccagacgtcgctgaagttagcgcagcgcctgttgcacgtaccgat
ctggcaactatcccgctgcctgctgttatcgagaagccggctgttgagcaagatgacaac
aacgattcccgtaacgactccaacggtatgccacgtcgctctcgccgctccccacgtcac
ttacgtgtgagcggtcaacgtcgccgtcgttatcgtgatgagcgttacccaacgcaatca
ccaatgccgatgaccgttgcgtgtgcttctcctgagcttgcttctggcaaagcctggatc
agctatcctgttgcccgcgcacaggaagaatcacagtacaacaacgttgaacaagctcct
gcagcgactattgagcaaccgtctgcacacgttaacgttgagcagcctgtggttcatgtt
gtcgccgcgcaagctgcggttgagactgtaaatgtcgaaacggcacacgttgaaacaacg
cacccagaagtgattgcaaccccagtaaacgagcagccacatctgattgccgcgattgac
gacgttgttgctgagcaagtcatcgatgaagttgaagctgcacaagatgacgttgccgtc
gcgactcatcaacagcaggctgctgagcttgctcaagaagcctctgttgttgtggataat
gttgttgtggacactgtggctgccgctccggttgaagacgttaagccggttgaagtggtt
gcacaggaagctgttgttgaagaaaccaaggttgaagaaacccaggttgaaacagctgtt
gttgaagagcctgtcattgcagtagtgccagaagtgaaagcggctcagccagaagttgcg
gctgttactcacgtcactaaacatgcaacagcaccaatgacaaaagctccagcaccggaa
tataccccggaagcaccacgtcagagcgattgggttcgcccaacgtatgagttcagtggc
cgcggttctgccggtggtaacagtgcaactcaccaggcaacagcgcctgctacgcgccca
caaagcgctgagtaa
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