Burkholderia seminalis: WJ12_09170
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Entry
WJ12_09170 CDS
T04851
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bsem
Burkholderia seminalis
Pathway
bsem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ12_09170 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsem03021
]
WJ12_09170 (rho)
03019 Messenger RNA biogenesis [BR:
bsem03019
]
WJ12_09170 (rho)
Transcription machinery [BR:
bsem03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WJ12_09170 (rho)
Messenger RNA biogenesis [BR:
bsem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WJ12_09170 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOJ24989
LinkDB
All DBs
Position
1:2036288..2037550
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AA seq
420 aa
AA seq
DB search
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagctcaagtctctgcacgtctccgaactgatcgaaatggccaatggc
ctggagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgtttgccattcttaaa
aagcgcgccaagacgggagagacgatcttcggcgacggtacgctcgaagtgctgccggac
ggcttcggtttcctgcgctcgccggaaatgtcgtatctcgccagcaccgacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggtgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgtcgctcgagcgcgaaatgcgcggcgaagaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctcgtcgcgtcgccg
aagtcgggcaagaccgtgatgctccagcacatcgcgcacgcgatcaagcagaaccacccg
gacgtgatcctgttcgtgctgctgatcgacgaacgccctgaagaagtgaccgaaatgcag
cgctcggtcgccggcgaggtgattgcctcgacgttcgacgaaccggccacgcgccacgtc
caggtcgccgaaatggtgatcgagaaggccaagcgcctcgtcgaaatgaagcacgacgtc
gtgatcctgctcgactcgatcacgcgtctcgcccgcgcgtacaacaccgtgatcccggcg
tcgggcaaggtgctgacgggcggtgtcgacgcgaacgcactgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggttcgctgacgatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtctacccgtcgatcaacctg
aacaagtcgggcacgcgtcgcgaagaaatgctgatcaagcccgagatccttcaaaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaggcgatggaattcctgctc
gacaagatccgccagacgaagagcaactccgagttcttcgacctgatgcgtcgcggcggc
tga
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